Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1379 856 0.0 seq877 324 4e-86 seq809 183 9e-44 >seq1379 Length=12095 Score = 856 bits (948), Expect = 0.0 Identities = 492/504 (98%), Gaps = 0/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6012 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 6071 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6072 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6131 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 6132 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 6191 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6192 GACCACTACTCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 6251 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 6252 CAAGGCCCTGCGATTCGTTAAGTTATCATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 6311 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 6312 TTTTTATCTAATAAATACACCCCTTCCGAAGTTGGGGTTTTTAGCATGTATTAGCTCTAG 6371 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 6372 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 6431 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 6432 GCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 6491 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 6492 AGACAAGCATATGACTACTGGCAG 6515 >seq877 Length=90828 Score = 324 bits (358), Expect = 4e-86 Identities = 267/325 (82%), Gaps = 24/325 (7%) Strand=Plus/Plus Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 ||||| ||||||||||| |||| |||||||| | |||| ||| |||||||| ||||| Sbjct 80581 TCCCCATTACCCGTTGAACCCATAGTAGGCCAAGACTCTACTATC-AAAGTTGACAGGGC 80639 Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT 273 |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 80640 AGAAATTTGAATGAACCATC--------AAGGCCATGCGATTCGTTAAGTTATTATGAAT 80691 Query 274 CACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC 333 ||||||||||||||||||| | |||||||||||| ||||||| ||| ||||||| || | Sbjct 80692 CACCAAGGAGCCCCGAAGG-CATTGGTTTTTTATTTAATAAACACATCCCTTCCAAAATT 80750 Query 334 GGGGTTTTT-------AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT----- 381 ||||||| | ||||||||||||| ||||| |||||||||| ||||| || Sbjct 80751 GGGGTTTGTGTGTTTAAGCATGTATTAGCCCTAGAGTTACCACGGTCATCCAGGTTTATG 80810 Query 382 --AGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 | |||||| || ||||||| |||| |||||||||||||||||| ||||| |||| | Sbjct 80811 AAATAAAGGTATTACCAAATAATTGATAGCTGATTTAATGAGCCATTGGCAGTCTCACCG 80870 Query 440 TATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||| || || Sbjct 80871 TATAGATTGCTTATACTTAAACGTG 80895 >seq809 Length=117299 Score = 183 bits (202), Expect = 9e-44 Identities = 134/155 (86%), Gaps = 8/155 (5%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||| ||||| Sbjct 56252 TACTCATTCCATTTACAAGATCCAAAACAGCCCGGTATCAGTATTTATTATCACGACCTC 56311 Query 62 CCCGTGTCGGG-----ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 |||||| |||| ||| |||||||||| |||||||||||| || |||||||| || Sbjct 56312 CCCGTGCCGGGATCATATTAGGTAATTTGCACGCCTGCTGCCT---TTAGATGTGGTGGC 56368 Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 |||||||||||||||||||| ||||| |||||||| Sbjct 56369 CGTTTCTCAGGCTCCCTCTCTGGAATAGAACCCTA 56403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510374111744