Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1379 856 0.0
seq877 324 4e-86
seq809 183 9e-44
>seq1379
Length=12095
Score = 856 bits (948), Expect = 0.0
Identities = 492/504 (98%), Gaps = 0/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6012 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 6071
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6072 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6131
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 6132 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 6191
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6192 GACCACTACTCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 6251
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 6252 CAAGGCCCTGCGATTCGTTAAGTTATCATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 6311
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 6312 TTTTTATCTAATAAATACACCCCTTCCGAAGTTGGGGTTTTTAGCATGTATTAGCTCTAG 6371
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 6372 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 6431
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6432 GCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 6491
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 6492 AGACAAGCATATGACTACTGGCAG 6515
>seq877
Length=90828
Score = 324 bits (358), Expect = 4e-86
Identities = 267/325 (82%), Gaps = 24/325 (7%)
Strand=Plus/Plus
Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213
||||| ||||||||||| |||| |||||||| | |||| ||| |||||||| |||||
Sbjct 80581 TCCCCATTACCCGTTGAACCCATAGTAGGCCAAGACTCTACTATC-AAAGTTGACAGGGC 80639
Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT 273
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 80640 AGAAATTTGAATGAACCATC--------AAGGCCATGCGATTCGTTAAGTTATTATGAAT 80691
Query 274 CACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC 333
||||||||||||||||||| | |||||||||||| ||||||| ||| ||||||| || |
Sbjct 80692 CACCAAGGAGCCCCGAAGG-CATTGGTTTTTTATTTAATAAACACATCCCTTCCAAAATT 80750
Query 334 GGGGTTTTT-------AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT----- 381
||||||| | ||||||||||||| ||||| |||||||||| ||||| ||
Sbjct 80751 GGGGTTTGTGTGTTTAAGCATGTATTAGCCCTAGAGTTACCACGGTCATCCAGGTTTATG 80810
Query 382 --AGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439
| |||||| || ||||||| |||| |||||||||||||||||| ||||| |||| |
Sbjct 80811 AAATAAAGGTATTACCAAATAATTGATAGCTGATTTAATGAGCCATTGGCAGTCTCACCG 80870
Query 440 TATAGATTGCTTATACTTAGACATG 464
||||||||||||||||||| || ||
Sbjct 80871 TATAGATTGCTTATACTTAAACGTG 80895
>seq809
Length=117299
Score = 183 bits (202), Expect = 9e-44
Identities = 134/155 (86%), Gaps = 8/155 (5%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||| |||||
Sbjct 56252 TACTCATTCCATTTACAAGATCCAAAACAGCCCGGTATCAGTATTTATTATCACGACCTC 56311
Query 62 CCCGTGTCGGG-----ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116
|||||| |||| ||| |||||||||| |||||||||||| || |||||||| ||
Sbjct 56312 CCCGTGCCGGGATCATATTAGGTAATTTGCACGCCTGCTGCCT---TTAGATGTGGTGGC 56368
Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151
|||||||||||||||||||| ||||| ||||||||
Sbjct 56369 CGTTTCTCAGGCTCCCTCTCTGGAATAGAACCCTA 56403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510374111744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |