Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq843 329 3e-85 seq908 107 2e-18 >seq843 Length=104768 Score = 329 bits (364), Expect = 3e-85 Identities = 764/1134 (67%), Gaps = 26/1134 (2%) Strand=Plus/Minus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 || || ||||||||||| || | | | || || | ||||| |||||| ||| ||| Sbjct 64211 TCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGCC 64152 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATG 65931 ||||| || |||||||| |||| ||||||||| |||||| || | || | || || || Sbjct 64151 TCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTT-CTTGACGACAACTTG 64093 Query 65932 CACGATA-CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990 || ||| | | | || ||| ||| || || | || || | | || Sbjct 64092 GCAGACCTCGT-GAAGCTTTTGGAAGTCATAA-GT----GGCGGTC-----TTCTCATCA 64044 Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 || | |||||| | ||||| ||||| | ||||| ||||| | ||| || || || Sbjct 64043 ACATAGG-TTGGGA-GAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCAC 63986 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 |||||||| ||||| ||||||| || || || ||||| || | ||||| ||| | Sbjct 63985 AGTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGT 63926 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||||| || ||||| ||||||||||| | |||| | || | ||||||||| ||| | Sbjct 63925 TGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAG 63866 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||||| ||| | || |||||| | || || | | | | | |||| | | Sbjct 63865 CCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT-CTTGCGACCCTTGCCCTCA 63807 Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 | ||||| | || || | |||||| ||||| | || |||| || || ||| Sbjct 63806 GACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGA 63747 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| || || ||||||| | ||| || || || ||| ||||| ||| || ||| Sbjct 63746 CACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGA 63687 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || |||||||| |||||||||||||| || || || |||||| | || || || Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || | |||||||||||| || | ||||| |||||||| || |||||||||||||| Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || ||| ||| |||||||| || || || | ||| |||||||| || | Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || |||| ||||| || || || || || ||| |||| | || || Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGA---GATGGCAGCACAA 66646 || || ||||||||| ||||| |||||||| || |||| || ||||| ||| || Sbjct 63446 CGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGC-GCA-AA 63389 Query 66647 TCGGCCAC-TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 || || |||| | | || || |||||| ||| |||| ||| | ||| |||| Sbjct 63388 TCTTTAACGTGTC--GTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCA 63331 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 || |||||| | | |||||| | || | ||||||||| || | ||||| || || Sbjct 63330 GGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAA 63271 Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825 ||| | || ||||| | ||||| ||||||||| |||| || || | || || ||||| Sbjct 63270 GTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAAT 63211 Query 66826 CCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATG 66885 |||| ||| ||||| | | | || || |||||| | | | | || | Sbjct 63210 TCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCG 63151 Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | | || || || || |||||||||| ||| ||||| || |||||||| Sbjct 63150 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAATC 63097 >seq908 Length=77775 Score = 107 bits (118), Expect = 2e-18 Identities = 229/335 (68%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| |||||||| |||||||| | || ||| | ||| | Sbjct 44690 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 44749 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | | | | ||| | || | | ||||| Sbjct 44750 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAACGAT-GACGAGCGTTACTTCATCTC 44808 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| || || || ||||| || ||||| ||||| | | || || Sbjct 44809 CCACGTCCTCGCTTTCTTCGCTGCCTCTGACGGGATTGTCAACGAGAACCTCCTCGAGCG 44868 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| |||| || || ||| | | ||||| || | |||||||| ||||| || | Sbjct 44869 CTTCA-GCAGTGAAGTCCAAATCCCCGAGGCCCGATTCTTCTACGGATTCCAAATCATGA 44927 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | ||||||||||| || |||| ||||| | Sbjct 44928 TGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTATATCATGGAGCAAG 44987 Query 61382 CGGAACGTGAACGA-TTGTTCAATGCCATCGAGAC 61415 | || || | | | ||||||||||||||||| Sbjct 44988 CACAA-AAGACCTACCTCTTCAATGCCATCGAGAC 45021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || |||||| | || |||||||| || || ||| | ||||| ||||||||||||||||| Sbjct 45169 GTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCATCTTCTGGTTGAAGAAACGTGGC 45228 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 || ||| | ||||| |||||| ||| ||| |||| || || || ||||| Sbjct 45229 CTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGG 45278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559695052960