Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq123 122 2e-25
>seq123
Length=40638
Score = 122 bits (134), Expect = 2e-25
Identities = 198/282 (70%), Gaps = 10/282 (4%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||| | | ||||||||
Sbjct 30188 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 30129
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| ||||| |||| | | | | ||| | | ||||| ||| |||||||||||||
Sbjct 30128 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTCCGCTACCTTAGGA 30069
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGCTT---CGCGTT 179
|| |||| | || ||||||| || | ||||| ||| |||| ||||| ||
Sbjct 30068 CCCTTATAGATAAGGCCGCCATTGATCGGGGTTTCCTTCAAAACCAAGCTTATATTAGTC 30009
Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239
| |||| ||| |||||| ||| || ||||||| |||||| | |||| | | |
Sbjct 30008 AACTAAGAAAATCCGTTAACCAGCCGACATCGGGCAGAAATCACACTCAATACTTTGATT 29949
Query 240 T-TCGTGTT--TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| | | || ||||||||||| |||||| | ||||||||||
Sbjct 29948 TATTATCTTACTGCAGAGTGCTTTGTTTTAATTAAACAGTCG 29907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260788337600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |