Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq234 468 1e-129
seq923 145 1e-32
>seq234
Length=7663
Score = 468 bits (518), Expect = 1e-129
Identities = 291/310 (94%), Gaps = 3/310 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2932 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 2991
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2992 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3051
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||
Sbjct 3052 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTGTC--CTCCTTGACC 3109
Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3110 GAAAGGTCCGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 3169
Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
||||||||||||||||| ||||||| |||| ||||||||| ||| ||||||||||||
Sbjct 3170 GCTCTTCAACGAGGAATTCCTAGTAGGCGCAAGTCATCAGCTTGCGCCGATTACGTCCCT 3229
Query 319 GCCCTTTGTA 328
||||||||||
Sbjct 3230 GCCCTTTGTA 3239
>seq923
Length=155195
Score = 145 bits (160), Expect = 1e-32
Identities = 133/166 (80%), Gaps = 3/166 (2%)
Strand=Plus/Minus
Query 164 ACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222
|||||||||| | ||||||| || || |||| ||| ||||| | | || |||||||||
Sbjct 131402 ACACTGACAGGGTCAACGAGCGTCCTC--CTTGACCGAAAGGTTTAGATAGTCTTGTTAA 131345
Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282
||||||||||| ||||||||||| || ||||||||||||| ||||| |||| ||||||
Sbjct 131344 CTTCTGTCGTGCTAGGGATAGAGCACTGTAATTATTGCTCTTTAACGAAGAATTCCTAGT 131285
Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||| | |||||| ||| ||||||||||| ||| ||||||
Sbjct 131284 AGACGCAAGCTATCAGCTTGCGCTGATTACGTCCATGCTATTTGTA 131239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947191238400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |