Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq234 468 1e-129 seq923 145 1e-32 >seq234 Length=7663 Score = 468 bits (518), Expect = 1e-129 Identities = 291/310 (94%), Gaps = 3/310 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 2932 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 2991 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2992 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3051 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||||||||||||||| || | ||||| || Sbjct 3052 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTGTC--CTCCTTGACC 3109 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3110 GAAAGGTCCGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 3169 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||| |||| ||||||||| ||| |||||||||||| Sbjct 3170 GCTCTTCAACGAGGAATTCCTAGTAGGCGCAAGTCATCAGCTTGCGCCGATTACGTCCCT 3229 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 3230 GCCCTTTGTA 3239 >seq923 Length=155195 Score = 145 bits (160), Expect = 1e-32 Identities = 133/166 (80%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 164 ACACTGACAGAGCCAACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||||||| | ||||||| || || |||| ||| ||||| | | || ||||||||| Sbjct 131402 ACACTGACAGGGTCAACGAGCGTCCTC--CTTGACCGAAAGGTTTAGATAGTCTTGTTAA 131345 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 ||||||||||| ||||||||||| || ||||||||||||| ||||| |||| |||||| Sbjct 131344 CTTCTGTCGTGCTAGGGATAGAGCACTGTAATTATTGCTCTTTAACGAAGAATTCCTAGT 131285 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| | |||||| ||| ||||||||||| ||| |||||| Sbjct 131284 AGACGCAAGCTATCAGCTTGCGCTGATTACGTCCATGCTATTTGTA 131239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947191238400