Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq234 794 0.0
seq175 598 1e-168
>seq234
Length=7663
Score = 794 bits (880), Expect = 0.0
Identities = 501/538 (93%), Gaps = 5/538 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6538 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 6479
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 6478 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 6419
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||| ||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 6418 AGCCCGCGAGGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 6359
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||| |||||||||||||||| |||| |||||||| ||
Sbjct 6358 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 6302
Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||||| ||| | ||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 6301 TTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 6243
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 6242 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 6183
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6182 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 6123
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6122 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 6063
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6062 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 6005
>seq175
Length=20380
Score = 598 bits (662), Expect = 1e-168
Identities = 413/463 (89%), Gaps = 6/463 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 7758 CTTTTGTTCTACTGGGGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGTGTTATG 7817
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||
Sbjct 7818 GTTTAACAGATGTGCCGCCCTAGCCAAACTCCCTACCTGGCAATGTCTTCAACCCGGATC 7877
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||| |||||||| || |||| | | | ||| |||| ||||| | |||||
Sbjct 7878 AGCCCGCGAGAGACCTTAATGCTAGAAGTTAGGCTTTGACACCCAGCTCCGCGTTATTGA 7937
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||| |||||||||||||||| |||| |||||||| ||
Sbjct 7938 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 7994
Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
|||||| || ||| | ||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 7995 TTCTACGCC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGAGTCTT 8053
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 8054 CTTTCCCCGCTGATTTTGCTAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 8113
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8114 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 8173
Query 426 TTGGCTACCTT-AAGAGAGTCATAGTTACTCCCGCCGTTTACC 467
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 8174 TTGGCTACCTTAAAGAGAGTCATAGTTACTCCCGCCGTTTACC 8216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635184874400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |