Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq234 794 0.0 seq175 598 1e-168 >seq234 Length=7663 Score = 794 bits (880), Expect = 0.0 Identities = 501/538 (93%), Gaps = 5/538 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6538 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 6479 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 6478 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 6419 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||| ||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 6418 AGCCCGCGAGGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 6359 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||| |||||||||||||||| |||| |||||||| || Sbjct 6358 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 6302 Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 6301 TTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 6243 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 6242 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 6183 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6182 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 6123 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6122 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 6063 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6062 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 6005 >seq175 Length=20380 Score = 598 bits (662), Expect = 1e-168 Identities = 413/463 (89%), Gaps = 6/463 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 7758 CTTTTGTTCTACTGGGGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGTGTTATG 7817 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||| Sbjct 7818 GTTTAACAGATGTGCCGCCCTAGCCAAACTCCCTACCTGGCAATGTCTTCAACCCGGATC 7877 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||| |||||||| || |||| | | | ||| |||| ||||| | ||||| Sbjct 7878 AGCCCGCGAGAGACCTTAATGCTAGAAGTTAGGCTTTGACACCCAGCTCCGCGTTATTGA 7937 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||| |||||||||||||||| |||| |||||||| || Sbjct 7938 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 7994 Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||| || ||| | ||| |||||||| ||| |||||||||||||||||||| ||||| Sbjct 7995 TTCTACGCC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGAGTCTT 8053 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 8054 CTTTCCCCGCTGATTTTGCTAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 8113 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8114 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 8173 Query 426 TTGGCTACCTT-AAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 8174 TTGGCTACCTTAAAGAGAGTCATAGTTACTCCCGCCGTTTACC 8216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635184874400