Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq234 324 2e-86
>seq234
Length=7663
Score = 324 bits (358), Expect = 2e-86
Identities = 245/280 (88%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 6862 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 6919
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6920 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6979
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179
||||| || ||| ||||| ||||||||||||||||||||||||| | | ||||| |||
Sbjct 6980 GAACGCGGCGAT--CCTCCTACACATCGTAGTCGGATACGAATAGGCCCTTGGCCCTGAA 7037
Query 180 CCTTAGCAGGCCGGCAACGGGCGTC-CCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238
|||||| |||||| ||| |||||| | | ||||| || ||||||| |||||| |||
Sbjct 7038 TCTTAGCTGGCCGGGAAC-GGCGTCGCGGTGGAAGTCCGCGGCGCTC-CCTGGCGTCTTG 7095
Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||||||||||| ||| ||| |||||||| |||||
Sbjct 7096 CAATTTCACCATGCGTAGGAATAGGACCTTTGCATACGAC 7135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819192659200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |