Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq234 324 2e-86 >seq234 Length=7663 Score = 324 bits (358), Expect = 2e-86 Identities = 245/280 (88%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 6862 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 6919 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6920 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6979 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||||| || ||| ||||| ||||||||||||||||||||||||| | | ||||| ||| Sbjct 6980 GAACGCGGCGAT--CCTCCTACACATCGTAGTCGGATACGAATAGGCCCTTGGCCCTGAA 7037 Query 180 CCTTAGCAGGCCGGCAACGGGCGTC-CCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238 |||||| |||||| ||| |||||| | | ||||| || ||||||| |||||| ||| Sbjct 7038 TCTTAGCTGGCCGGGAAC-GGCGTCGCGGTGGAAGTCCGCGGCGCTC-CCTGGCGTCTTG 7095 Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||||||||||| ||| ||| |||||||| ||||| Sbjct 7096 CAATTTCACCATGCGTAGGAATAGGACCTTTGCATACGAC 7135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819192659200