Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq234 847 0.0
seq378 201 3e-49
>seq234
Length=7663
Score = 847 bits (938), Expect = 0.0
Identities = 491/504 (97%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 2066
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2006
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 2005 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 1946
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 1886
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1885 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 1826
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 1825 TTTTTATCTAATAAATACACCCCTCCCGAAGTCGAGGCTTTTAGCATGTATTAGCTCTAG 1766
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1765 AATTACCACGGTTATCCAAGTAGTAAGGTACCATCAAATAAACGATAACTGATTTAATGA 1706
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1705 GCCATTCGCAGTTTCACAGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1647
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 1646 AGACAAGCATATGACTACTGGCAG 1623
>seq378
Length=272585
Score = 201 bits (222), Expect = 3e-49
Identities = 116/119 (97%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 39418 CCTGTATCAGTATTTATTGTCACTACCTCCCCGAATCGGGATTGGGTAATTTGCGCGCCT 39477
Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 39478 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATAGAACCCTA 39536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510386028800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |