Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq411 306 3e-78
seq887 123 2e-23
>seq411
Length=256942
Score = 306 bits (338), Expect = 3e-78
Identities = 643/947 (68%), Gaps = 14/947 (1%)
Strand=Plus/Plus
Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059
||||||| || | ||||| | ||| ||| ||| | ||| || || |||| |||||||
Sbjct 122016 TGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGA 122075
Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119
|||| || |||||||| || || || ||||| || | ||||| || || ||||| |
Sbjct 122076 CAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTC 122135
Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179
| ||||| ||||||||||| | |||| | || | || ||||| ||||| || | |
Sbjct 122136 GGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAA 122195
Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA--CCTTTGCGTTCGTA 66237
||| || |||||| ||||||| | || | | | |||| ||| || | | ||
Sbjct 122196 TGGAGTACCAAAGTTTCTGTGCCTTGATGGT-CTTGCGACCCTTGCCCTCAGCCT-CATA 122253
Query 66238 ATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTG 66297
| ||||| || ||||| ||||| | || || | |||| ||| |||| ||
Sbjct 122254 CTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTT 122313
Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357
|| |||||||| | ||| |||| || ||| ||||| ||| || ||||| || ||
Sbjct 122314 GGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGAT 122373
Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417
|||||| |||||||||||||| || || || || || ||||||||||||| || |
Sbjct 122374 CCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAG 122433
Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477
|| ||| |||| || | || || |||||||| || |||||||||||||| | ||
Sbjct 122434 ATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGG 122493
Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537
|| ||| ||||| ||||| || || | || |||||||| || | | ||| ||
Sbjct 122494 TCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGG 122553
Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597
|||| ||||| || ||||| || ||||| | ||| | ||| || || ||
Sbjct 122554 AACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCT 122613
Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACT 66655
||| ||||| ||||| |||||||| || |||| ||||| |||||| || | |
Sbjct 122614 GTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGT 122673
Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715
||| | | || || ||||| ||| |||| ||| | | | |||| ||| ||||
Sbjct 122674 GTC--GTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGT 122731
Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775
|| | | |||||| |||| | |||||| || || | |||||| || ||||| | ||
Sbjct 122732 TGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATTTGCCT 122791
Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC- 66834
||||| || || ||||| || | || || || | ||||| ||||| || | |||
Sbjct 122792 GACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCT 122851
Query 66835 ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGAT--CCTTGATATGCATTAAG 66892
||| ||||| | | || || || |||||| ||| | | | || | | | |
Sbjct 122852 ACA-CGCATGATCATGTGCTGCGGGCGTTCG--CAGATTTTGCCATCGAGGCGGAGAAGG 122908
Query 66893 TAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
|| || ||||| |||||||||| ||| ||||| ||| ||||| ||
Sbjct 122909 TATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTC 122955
Score = 129 bits (142), Expect = 5e-25
Identities = 315/472 (67%), Gaps = 4/472 (1%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| ||||||||||| | | ||| ||| | || | ||||||||||| || |||
Sbjct 121112 TCGACAGTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTC 121171
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196
|||||||| |||| | |||||||| || | || |||| | | | || ||
Sbjct 121172 TTGAGGCCCAACTTCCAACCTGCAAAATGCATAC-TGGTGATCTTGCCCATTGTAGGATC 121230
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| || || |||| || ||| ||||| |||||| ||||||||| ||||||||
Sbjct 121231 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCAT 121290
Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAA 65315
| | ||| ||| || || ||||||||||||||||| || | | | | |||
Sbjct 121291 CTGGACGATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGA-GCCTTGATGTCAG 121349
Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375
|||||| | || | || | ||||||| | ||| || || | ||| |||
Sbjct 121350 CTGGAATGTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGT 121409
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|||||||| | |||| ||| | ||||| | | ||| | |||| ||||||||
Sbjct 121410 TGTCTGACCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGA 121469
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
|||| || | || |||||||| ||||||||||| ||| || || ||| ||||
Sbjct 121470 ACTCTCCAGCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGT 121529
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
|| || |||||||| ||| ||||| ||||| ||||| || | |||
Sbjct 121530 TGAACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAA 121581
>seq887
Length=503426
Score = 123 bits (136), Expect = 2e-23
Identities = 309/460 (67%), Gaps = 11/460 (2%)
Strand=Plus/Plus
Query 61477 ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536
||||||| | | || ||| | ||||| || | || |||||| | || |||||||| ||
Sbjct 202052 ACATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCA 202111
Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596
|| ||| | ||||| ||||||||||| ||||| || ||| |||| || |||||| |||
Sbjct 202112 TTCGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAAC 202171
Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656
||||| || || || |||||||| | || ||| |||||| | || ||| | |
Sbjct 202172 GAGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCAC 202231
Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT-GAGAT-TGTTC-GTGAGGCGGTA 61713
| || | |||| || | | ||| | | | |||| | || |||||| ||
Sbjct 202232 T---TGAAGCATCG-CCCAAGCA--AGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTT 202285
Query 61714 ACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773
||||| ||||| ||| |||| || ||| | || | || |||||||||| |
Sbjct 202286 GAAATCGAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCC 202345
Query 61774 GGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTAT 61832
|| ||| ||| || ||||| |||||||| || ||||| | | | |||| |
Sbjct 202346 AACCTGATGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAAC 202405
Query 61833 GAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892
|| | |||| || | |||||||| || |||||||| | || || || | ||
Sbjct 202406 GACAAAG-TCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGG 202464
Query 61893 CAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932
|||||| || || || ||||| ||||| || || || |||
Sbjct 202465 CAAGACAAACTTCTTTGAGAAGCGTGTTGGTGATTACCAA 202504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397563518042000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |