Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq411 306 3e-78 seq887 123 2e-23 >seq411 Length=256942 Score = 306 bits (338), Expect = 3e-78 Identities = 643/947 (68%), Gaps = 14/947 (1%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 ||||||| || | ||||| | ||| ||| ||| | ||| || || |||| ||||||| Sbjct 122016 TGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGA 122075 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 |||| || |||||||| || || || ||||| || | ||||| || || ||||| | Sbjct 122076 CAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTC 122135 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||||| ||||||||||| | |||| | || | || ||||| ||||| || | | Sbjct 122136 GGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAA 122195 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA--CCTTTGCGTTCGTA 66237 ||| || |||||| ||||||| | || | | | |||| ||| || | | || Sbjct 122196 TGGAGTACCAAAGTTTCTGTGCCTTGATGGT-CTTGCGACCCTTGCCCTCAGCCT-CATA 122253 Query 66238 ATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTG 66297 | ||||| || ||||| ||||| | || || | |||| ||| |||| || Sbjct 122254 CTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTT 122313 Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357 || |||||||| | ||| |||| || ||| ||||| ||| || ||||| || || Sbjct 122314 GGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGAT 122373 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 |||||| |||||||||||||| || || || || || ||||||||||||| || | Sbjct 122374 CCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAG 122433 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 || ||| |||| || | || || |||||||| || |||||||||||||| | || Sbjct 122434 ATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGG 122493 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 || ||| ||||| ||||| || || | || |||||||| || | | ||| || Sbjct 122494 TCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGG 122553 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 |||| ||||| || ||||| || ||||| | ||| | ||| || || || Sbjct 122554 AACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCT 122613 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACT 66655 ||| ||||| ||||| |||||||| || |||| ||||| |||||| || | | Sbjct 122614 GTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGT 122673 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715 ||| | | || || ||||| ||| |||| ||| | | | |||| ||| |||| Sbjct 122674 GTC--GTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGT 122731 Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775 || | | |||||| |||| | |||||| || || | |||||| || ||||| | || Sbjct 122732 TGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATTTGCCT 122791 Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC- 66834 ||||| || || ||||| || | || || || | ||||| ||||| || | ||| Sbjct 122792 GACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCT 122851 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGAT--CCTTGATATGCATTAAG 66892 ||| ||||| | | || || || |||||| ||| | | | || | | | | Sbjct 122852 ACA-CGCATGATCATGTGCTGCGGGCGTTCG--CAGATTTTGCCATCGAGGCGGAGAAGG 122908 Query 66893 TAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || || ||||| |||||||||| ||| ||||| ||| ||||| || Sbjct 122909 TATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTC 122955 Score = 129 bits (142), Expect = 5e-25 Identities = 315/472 (67%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | | ||| ||| | || | ||||||||||| || ||| Sbjct 121112 TCGACAGTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTC 121171 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 |||||||| |||| | |||||||| || | || |||| | | | || || Sbjct 121172 TTGAGGCCCAACTTCCAACCTGCAAAATGCATAC-TGGTGATCTTGCCCATTGTAGGATC 121230 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || |||| || ||| ||||| |||||| ||||||||| |||||||| Sbjct 121231 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCAT 121290 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAA 65315 | | ||| ||| || || ||||||||||||||||| || | | | | ||| Sbjct 121291 CTGGACGATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGA-GCCTTGATGTCAG 121349 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 |||||| | || | || | ||||||| | ||| || || | ||| ||| Sbjct 121350 CTGGAATGTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGT 121409 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 |||||||| | |||| ||| | ||||| | | ||| | |||| |||||||| Sbjct 121410 TGTCTGACCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGA 121469 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 |||| || | || |||||||| ||||||||||| ||| || || ||| |||| Sbjct 121470 ACTCTCCAGCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGT 121529 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 || || |||||||| ||| ||||| ||||| ||||| || | ||| Sbjct 121530 TGAACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAA 121581 >seq887 Length=503426 Score = 123 bits (136), Expect = 2e-23 Identities = 309/460 (67%), Gaps = 11/460 (2%) Strand=Plus/Plus Query 61477 ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536 ||||||| | | || ||| | ||||| || | || |||||| | || |||||||| || Sbjct 202052 ACATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCA 202111 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 || ||| | ||||| ||||||||||| ||||| || ||| |||| || |||||| ||| Sbjct 202112 TTCGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAAC 202171 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656 ||||| || || || |||||||| | || ||| |||||| | || ||| | | Sbjct 202172 GAGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCAC 202231 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT-GAGAT-TGTTC-GTGAGGCGGTA 61713 | || | |||| || | | ||| | | | |||| | || |||||| || Sbjct 202232 T---TGAAGCATCG-CCCAAGCA--AGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTT 202285 Query 61714 ACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773 ||||| ||||| ||| |||| || ||| | || | || |||||||||| | Sbjct 202286 GAAATCGAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCC 202345 Query 61774 GGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTAT 61832 || ||| ||| || ||||| |||||||| || ||||| | | | |||| | Sbjct 202346 AACCTGATGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAAC 202405 Query 61833 GAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892 || | |||| || | |||||||| || |||||||| | || || || | || Sbjct 202406 GACAAAG-TCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGG 202464 Query 61893 CAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 |||||| || || || ||||| ||||| || || || ||| Sbjct 202465 CAAGACAAACTTCTTTGAGAAGCGTGTTGGTGATTACCAA 202504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563518042000