Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq74 194 9e-48 seq1091 104 1e-20 >seq74 Length=30834 Score = 194 bits (214), Expect = 9e-48 Identities = 113/117 (97%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 20542 GAACCCAAAGACTTTGATTTCTCGTAAGATGCCGAGCGAGTCAAAAAGATAACATCGCCC 20601 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 20602 GATCTCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 20658 >seq1091 Length=12727 Score = 104 bits (114), Expect = 1e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 17 ATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCAT 76 |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 6406 ATTTCTCGTAAGATGCCGAGCGAGTCAAAAAGATAACATCGCCCGATCTCTAGTCGGCAT 6465 Query 77 AGTTT 81 ||||| Sbjct 6466 AGTTT 6470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278374555110