Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq74 939 0.0 seq2176 111 7e-22 >seq74 Length=30834 Score = 939 bits (1040), Expect = 0.0 Identities = 607/662 (92%), Gaps = 2/662 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 19137 TGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTATAT 19078 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19077 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 19018 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 19017 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 18958 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTC-GGCCGGTGCACTCTTCTGCGG 261 |||||||||||||||||| |||| ||| || ||| || || ||||||||| | | || Sbjct 18957 GCAACCAGACTTGCCCGCCGTTGATCATCCT-CCCTTCTGGGTGGTGCACTCAGCGGTGG 18899 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 ||||||||||||| | | || ||| ||||||||||| ||||| || || || ||||| Sbjct 18898 TCAGGCCAGCATCGGTTTTGGTGGTGGGATAAAGGCCTTGGGAACGTAGCTCCTCTCGGG 18839 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381 | |||||||||||| |||| ||||| ||| || |||| |||| ||||||| ||||||| Sbjct 18838 GAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTCGGCTAG 18779 Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 18778 GATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 18719 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAAC 501 |||||||||||||||||||| |||||| | |||||||| || ||||||||||||| |||| Sbjct 18718 CTATGCGAGTGTTTGGGTGTTAAACCCATACGCGTAATTAACGTGAACGGAGGTGAGAAC 18659 Query 502 CCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 561 || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18658 CCTTTAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 18599 Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 18598 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAAATAGGGTGAAGCCAGAGGAAACTC 18539 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 18538 TGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 18479 Query 682 GA 683 || Sbjct 18478 GA 18477 Score = 935 bits (1036), Expect = 0.0 Identities = 606/662 (92%), Gaps = 2/662 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 28543 TGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTATAT 28484 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28483 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 28424 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 28423 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTT 28364 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTC-GGCCGGTGCACTCTTCTGCGG 261 |||||||||||||||||| |||| ||| || ||| || || ||||||||| | | || Sbjct 28363 GCAACCAGACTTGCCCGCCGTTGATCATCCT-CCCTTCTGGGTGGTGCACTCAGCGGTGG 28305 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 ||||||||||||| | | || ||| ||||||||||| ||||| || || || ||||| Sbjct 28304 TCAGGCCAGCATCGGTTTTGGTGGTGGGATAAAGGCCTTGGGAACGTAGCTCCTCTCGGG 28245 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381 | |||||||||||| |||| ||||| ||| || |||| |||| ||||||| ||||||| Sbjct 28244 GAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTCGGCTAG 28185 Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 28184 GATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 28125 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAAC 501 ||||| |||||||||||||| |||||| | |||||||| || ||||||||||||| |||| Sbjct 28124 CTATGTGAGTGTTTGGGTGTTAAACCCATACGCGTAATTAACGTGAACGGAGGTGAGAAC 28065 Query 502 CCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 561 || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28064 CCTTTAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATA 28005 Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 28004 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAAATAGGGTGAAGCCAGAGGAAACTC 27945 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 27944 TGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 27885 Query 682 GA 683 || Sbjct 27884 GA 27883 >seq2176 Length=8484 Score = 111 bits (122), Expect = 7e-22 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 491 GAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGA 550 |||||| |||| | | |||||| |||| |||| |||||||||||||||||||||||| Sbjct 4753 GAGGTGAGAACATTTTAAGGTGCATCATCCACCGGCCCTGATGTCTTCGGATGGATTTGA 4812 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAG 579 |||||||||||| |||||||||||||||| Sbjct 4813 GTAAGAGCATAGTTGTTGGGACCCGAAAG 4841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079790883950