Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq74 619 4e-175 seq2484 125 2e-26 >seq74 Length=30834 Score = 619 bits (686), Expect = 4e-175 Identities = 401/436 (92%), Gaps = 5/436 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16404 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 16463 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 16464 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 16523 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 16524 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 16583 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| |||||||||||||||| |||| | |||||||| || Sbjct 16584 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 16640 Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 16641 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 16699 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 16700 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 16759 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16760 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 16819 Query 426 TTGGCTACCTTAAGAG 441 |||||||||||||||| Sbjct 16820 TTGGCTACCTTAAGAG 16835 Score = 619 bits (686), Expect = 4e-175 Identities = 401/436 (92%), Gaps = 5/436 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25810 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 25869 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 25870 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 25929 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 25930 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 25989 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| |||||||||||||||| |||| | |||||||| || Sbjct 25990 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 26046 Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 26047 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 26105 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 26106 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 26165 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26166 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 26225 Query 426 TTGGCTACCTTAAGAG 441 |||||||||||||||| Sbjct 26226 TTGGCTACCTTAAGAG 26241 Score = 181 bits (200), Expect = 3e-43 Identities = 106/110 (96%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 17141 CTTAATTGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTT 17200 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 17201 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 17250 Score = 181 bits (200), Expect = 3e-43 Identities = 106/110 (96%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 26547 CTTAATTGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTT 26606 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 26607 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 26656 >seq2484 Length=7667 Score = 125 bits (138), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCG 132 || ||||||| |||| ||||||||||||||||||||||||| |||||| ||| |||| Sbjct 4522 CACATGTGCCACCCCGGCCAAACTCCCCACCTGACAATGTCTTCAACCTATATCAGCCCA 4463 Query 133 CGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGT 192 |||| ||| |||| | | | | | | ||| |||| ||||||| ||| | ||||| Sbjct 4462 CGAAAGACTTTAATACTATATGCTAGGCTTTGACACCCAGCTCCGCTTTATTAAATAAGT 4403 Query 193 aaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTAC 252 ||||| || |||| || |||||||||||| || || | |||||| |||||| | Sbjct 4402 AAAAACACTATAAAGGCGTTGGTATTTCACTAGCCCCTTA---TTTCCCACCTATTCTCC 4346 Query 253 A-CCTCTCAAGTCATTTCACAA 273 | ||||| | || |||||||| Sbjct 4345 ACCCTCT-ACATCTTTTCACAA 4325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635040584352