Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq74 619 4e-175
seq2484 125 2e-26
>seq74
Length=30834
Score = 619 bits (686), Expect = 4e-175
Identities = 401/436 (92%), Gaps = 5/436 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16404 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 16463
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 16464 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 16523
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 16524 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 16583
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| |||| |||||||||||||||| |||| | |||||||| ||
Sbjct 16584 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 16640
Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 16641 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 16699
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 16700 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 16759
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16760 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 16819
Query 426 TTGGCTACCTTAAGAG 441
||||||||||||||||
Sbjct 16820 TTGGCTACCTTAAGAG 16835
Score = 619 bits (686), Expect = 4e-175
Identities = 401/436 (92%), Gaps = 5/436 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25810 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 25869
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 25870 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 25929
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||| || |||| ||| | ||| |||||||||||| |||||
Sbjct 25930 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 25989
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| |||| |||||||||||||||| |||| | |||||||| ||
Sbjct 25990 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 26046
Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 26047 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 26105
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 26106 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 26165
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26166 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 26225
Query 426 TTGGCTACCTTAAGAG 441
||||||||||||||||
Sbjct 26226 TTGGCTACCTTAAGAG 26241
Score = 181 bits (200), Expect = 3e-43
Identities = 106/110 (96%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 17141 CTTAATTGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTT 17200
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 17201 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 17250
Score = 181 bits (200), Expect = 3e-43
Identities = 106/110 (96%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 26547 CTTAATTGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTT 26606
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 26607 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 26656
>seq2484
Length=7667
Score = 125 bits (138), Expect = 2e-26
Identities = 151/202 (75%), Gaps = 5/202 (2%)
Strand=Plus/Minus
Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCG 132
|| ||||||| |||| ||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 4522 CACATGTGCCACCCCGGCCAAACTCCCCACCTGACAATGTCTTCAACCTATATCAGCCCA 4463
Query 133 CGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGT 192
|||| ||| |||| | | | | | | ||| |||| ||||||| ||| | |||||
Sbjct 4462 CGAAAGACTTTAATACTATATGCTAGGCTTTGACACCCAGCTCCGCTTTATTAAATAAGT 4403
Query 193 aaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTAC 252
||||| || |||| || |||||||||||| || || | |||||| |||||| |
Sbjct 4402 AAAAACACTATAAAGGCGTTGGTATTTCACTAGCCCCTTA---TTTCCCACCTATTCTCC 4346
Query 253 A-CCTCTCAAGTCATTTCACAA 273
| ||||| | || ||||||||
Sbjct 4345 ACCCTCT-ACATCTTTTCACAA 4325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635040584352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |