Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 327 9e-85
seq2965 109 4e-19
>seq1315
Length=11532
Score = 327 bits (362), Expect = 9e-85
Identities = 643/944 (68%), Gaps = 5/944 (1%)
Strand=Plus/Plus
Query 65999 TTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCG 66058
|||||| | ||||| ||||| | |||||| ||||| | ||| ||||| || || |||
Sbjct 311 TTGGGA-GAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCG 369
Query 66059 ACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTG 66118
||||| || || |||| || || || ||||| || | ||||| ||| || |||||
Sbjct 370 ACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTT 429
Query 66119 CGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATG 66178
|| ||||| ||||||||||| | |||| | || | ||||||||| ||| | ||| | |
Sbjct 430 CGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGG 489
Query 66179 ATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTA 66237
|| | || |||||| | ||||| | | ||| |||| | | | |||||
Sbjct 490 ATAGAGTACCAAAGCTTTTGGGCCTTGATGCTTT-TACGACCCTTGCCCTCAGACTCGTA 548
Query 66238 ATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTG 66297
| || || | ||||| ||||| | || |||| || | ||||||| ||
Sbjct 549 TTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTT 608
Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357
|| ||||||| | ||| || | || ||| ||||| ||| || ||||| || ||
Sbjct 609 AGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAAT 668
Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417
|||||| |||||||||||||| || || || |||||| | ||||| || || || |
Sbjct 669 CCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAG 728
Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477
|||||||||||| || | || || |||||||| || ||||| |||||||| | ||
Sbjct 729 GTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGG 788
Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537
||| ||| |||||||| || || || || ||| |||||||| || || | ||| ||
Sbjct 789 ACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGG 848
Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597
|||| ||||| || || || || || || | ||| | || ||| || ||
Sbjct 849 AACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCT 908
Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657
||||||||| |||||||||||||| || |||| || || |||||| || |||
Sbjct 909 GTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGT 968
Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717
| || || |||||| ||| |||| ||| | ||| ||||||| ||||||
Sbjct 969 GTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTG 1028
Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777
| || ||||| | || | ||| || || |||| ||||| || ||||| | || ||
Sbjct 1029 TGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGA 1088
Query 66778 CATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-AC 66836
||| | ||||| ||||||||| |||| ||||| | || || || || |||| || ||
Sbjct 1089 CATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGCGAC 1148
Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896
| ||||| | | | ||| || |||||| | | | | || | | | | || |
Sbjct 1149 A-CGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGATATG 1207
Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940
| || || |||||||||| ||| ||||| ||| |||||||||
Sbjct 1208 ATCGCTCAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCG 1251
>seq2965
Length=6591
Score = 109 bits (120), Expect = 4e-19
Identities = 138/188 (73%), Gaps = 4/188 (2%)
Strand=Plus/Plus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGA 61491
||| || |||||||| || |||||| || |||| | |||| |||| | ||||
Sbjct 5806 GAAGGCCGATTGGGCTGTCCGATGGATC--CAAGACAAGGAGTCTACCTTTGCTCAACGT 5863
Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551
| | || ||||| | || |||||| | || |||||||| || || || | |||||
Sbjct 5864 CTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTC 5923
Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611
||||||||||| ||||| || ||| | ||||| |||||| ||| |||||||| || ||
Sbjct 5924 TGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGT 5983
Query 61612 GACGAGGG 61619
||||||||
Sbjct 5984 GACGAGGG 5991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397520762585360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |