Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1315 327 9e-85 seq2965 109 4e-19 >seq1315 Length=11532 Score = 327 bits (362), Expect = 9e-85 Identities = 643/944 (68%), Gaps = 5/944 (1%) Strand=Plus/Plus Query 65999 TTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCG 66058 |||||| | ||||| ||||| | |||||| ||||| | ||| ||||| || || ||| Sbjct 311 TTGGGA-GAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCG 369 Query 66059 ACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTG 66118 ||||| || || |||| || || || ||||| || | ||||| ||| || ||||| Sbjct 370 ACAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTT 429 Query 66119 CGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATG 66178 || ||||| ||||||||||| | |||| | || | ||||||||| ||| | ||| | | Sbjct 430 CGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGG 489 Query 66179 ATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTA 66237 || | || |||||| | ||||| | | ||| |||| | | | ||||| Sbjct 490 ATAGAGTACCAAAGCTTTTGGGCCTTGATGCTTT-TACGACCCTTGCCCTCAGACTCGTA 548 Query 66238 ATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTG 66297 | || || | ||||| ||||| | || |||| || | ||||||| || Sbjct 549 TTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTT 608 Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357 || ||||||| | ||| || | || ||| ||||| ||| || ||||| || || Sbjct 609 AGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAAT 668 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 |||||| |||||||||||||| || || || |||||| | ||||| || || || | Sbjct 669 CCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAG 728 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 |||||||||||| || | || || |||||||| || ||||| |||||||| | || Sbjct 729 GTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGG 788 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 ||| ||| |||||||| || || || || ||| |||||||| || || | ||| || Sbjct 789 ACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGG 848 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 |||| ||||| || || || || || || | ||| | || ||| || || Sbjct 849 AACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCT 908 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657 ||||||||| |||||||||||||| || |||| || || |||||| || ||| Sbjct 909 GTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGT 968 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | || || |||||| ||| |||| ||| | ||| ||||||| |||||| Sbjct 969 GTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTG 1028 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 | || ||||| | || | ||| || || |||| ||||| || ||||| | || || Sbjct 1029 TGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGA 1088 Query 66778 CATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-AC 66836 ||| | ||||| ||||||||| |||| ||||| | || || || || |||| || || Sbjct 1089 CATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGCGAC 1148 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 | ||||| | | | ||| || |||||| | | | | || | | | | || | Sbjct 1149 A-CGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGATATG 1207 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 | || || |||||||||| ||| ||||| ||| ||||||||| Sbjct 1208 ATCGCTCAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCG 1251 >seq2965 Length=6591 Score = 109 bits (120), Expect = 4e-19 Identities = 138/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGA 61491 ||| || |||||||| || |||||| || |||| | |||| |||| | |||| Sbjct 5806 GAAGGCCGATTGGGCTGTCCGATGGATC--CAAGACAAGGAGTCTACCTTTGCTCAACGT 5863 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || ||||| | || |||||| | || |||||||| || || || | ||||| Sbjct 5864 CTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTC 5923 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||||||||||| ||||| || ||| | ||||| |||||| ||| |||||||| || || Sbjct 5924 TGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGT 5983 Query 61612 GACGAGGG 61619 |||||||| Sbjct 5984 GACGAGGG 5991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397520762585360