Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq245 619 4e-175 seq1765 167 8e-39 >seq245 Length=8279 Score = 619 bits (686), Expect = 4e-175 Identities = 401/436 (92%), Gaps = 5/436 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1660 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1719 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1720 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1779 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | ||| |||||||||||| ||||| Sbjct 1780 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTTTGACACCCAGTTCCGCTTTATTGA 1839 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| |||||||||||||||| |||| | |||||||| || Sbjct 1840 ATAAGTAAAAAAACTATAAAGGTAGTGGTATTTCACCGGCGCGTTA---GCTCCCACCTA 1896 Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 1897 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 1955 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1956 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 2015 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2016 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 2075 Query 426 TTGGCTACCTTAAGAG 441 |||||||||||||||| Sbjct 2076 TTGGCTACCTTAAGAG 2091 Score = 181 bits (200), Expect = 3e-43 Identities = 106/110 (96%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2398 CTTAATTGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTT 2457 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2458 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 2507 >seq1765 Length=68846 Score = 167 bits (184), Expect = 8e-39 Identities = 166/214 (78%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 84 CCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACCTT 143 |||||||||||||||||||||| ||||||| |||| || || |||||||||||||||| Sbjct 8712 CCCCAGCCAAACTCCCCACCTGGCAATGTCTTCAATCCAAGTCAGCCCGCGAAGGACCTT 8653 Query 144 AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGAT 203 || || |||| | | | | | |||||||| ||| | |||||||||| || || Sbjct 8652 AATGCTAGAAGTTAGGCTTTAACACCCAGTTCCACTTTA-----TAAGTAAAAATACTAT 8598 Query 204 AAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGT 263 || |||||||| ||||||| || || |||||||| ||||||||||| | | || Sbjct 8597 AATGGTAGTGGCATTTCAC--CCGGCGCGTTAGCTCCCACCTATTCTACACCCCCTATGT 8540 Query 264 CATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 | |||||||| ||| |||||||||||||||||| Sbjct 8539 CTTTTCACAATGTCAAACTAGAGTCAAGCTCAAC 8506 Score = 127 bits (140), Expect = 7e-27 Identities = 96/117 (82%), Gaps = 16/117 (14%) Strand=Plus/Minus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 8131 CAGGGTCTTCTTTCCCCCCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 8072 Query 357 ATAGTAGATAGG----------------GACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||| |||||||||| ||||| |||||| ||||| Sbjct 8071 ATAGTAGATAGGGGTACTTGTAGAAAGAGACAGTGGGAGTCTCGCTAATCCTTTCAT 8015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635157631968