Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq245 883 0.0
seq1765 453 3e-125
seq1804 230 7e-58
>seq245
Length=8279
Score = 883 bits (978), Expect = 0.0
Identities = 498/504 (99%), Gaps = 0/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6676 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 6735
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6736 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6795
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 6796 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 6855
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6856 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 6915
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 6916 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 6975
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6976 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 7035
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 7036 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 7095
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 7096 GCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 7155
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 7156 AGACAAGCATATGACTACTGGCAG 7179
>seq1765
Length=68846
Score = 453 bits (502), Expect = 3e-125
Identities = 311/351 (89%), Gaps = 5/351 (1%)
Strand=Plus/Minus
Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211
||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 5168 ATTCCCCGTTACCCGTTAAAACCATGGTAGGCCACTATCCTACTATCGAAAGTTGATAGG 5109
Query 212 GCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGA 271
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 5108 GCAGAAATTTGAATGAACCATCGCCGGCACAAGGCCATGCGATTCGTTAAGTTATTATGA 5049
Query 272 ATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG 331
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 5048 ATCACCAAGGAGCCCCGAAGGGCATTGGTTTTTTATCTAATAAATACACCTCTTCCGAGG 4989
Query 332 TCGGGGTTTTTAGCAT-----GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386
||| ||||||||| || | | |||||||| |||||||||| | ||| | |||||||
Sbjct 4988 TCGAGGTTTTTAGTATATACGGAACTAGCTCTAAAATTACCACGTTCATCTAAGTAGTAA 4929
Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446
|||||||| ||||||||||||||| |||| || ||| ||||| ||||||||| |||||||
Sbjct 4928 GGTACTATTAAATAAACGATAACTAATTTCATAAGCTATTCGTAGTTTCACTATATAGAT 4869
Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497
| |||||||||| || || ||||||||||| || ||| |||| ||||
Sbjct 4868 TACTTATACTTAAGTATATATAGCTTAATCTTTAAGGAAAGTATATAACTA 4818
Score = 127 bits (140), Expect = 6e-27
Identities = 73/75 (97%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 77 GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 136
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 5570 GGTAATTTGCGCGCCTGCTGTCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 5511
Query 137 CGGAATCGAACCCTA 151
|||||| ||||||||
Sbjct 5510 CGGAATAGAACCCTA 5496
>seq1804
Length=65490
Score = 230 bits (254), Expect = 7e-58
Identities = 171/199 (86%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362
|||||||||| | | |||||||||||||| |||| || ||||||||||||||||| |||
Sbjct 40393 TTTATCTAATGATT-CACCCCTTCCGAAGCCGGGTTTCTTAGCATGTATTAGCTCAAGAC 40335
Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422
||| || ||||||||| ||||| |||| ||||||||| ||| | |||||||||||||||
Sbjct 40334 TTATCAAGGTTATCCAAGTAGTGAGGTCCTATCAAATCAACTACGACTGATTTAATGAGC 40275
Query 423 CATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAG 482
|||| || ||||| ||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 40274 CATTTGCCGTTTC-----ATAGATTACTTATACTTAGACACGCATGGCGTAATCTTTGAG 40220
Query 483 ACAAGCATATGACTACTGG 501
||||||||| |||||||||
Sbjct 40219 ACAAGCATACGACTACTGG 40201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510360865536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |