Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq245 883 0.0 seq1765 453 3e-125 seq1804 230 7e-58 >seq245 Length=8279 Score = 883 bits (978), Expect = 0.0 Identities = 498/504 (99%), Gaps = 0/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6676 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 6735 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6736 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6795 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 6796 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 6855 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6856 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 6915 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 6916 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 6975 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6976 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 7035 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 7036 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 7095 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 7096 GCCATTCGCAGTTTCACCGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 7155 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 7156 AGACAAGCATATGACTACTGGCAG 7179 >seq1765 Length=68846 Score = 453 bits (502), Expect = 3e-125 Identities = 311/351 (89%), Gaps = 5/351 (1%) Strand=Plus/Minus Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| Sbjct 5168 ATTCCCCGTTACCCGTTAAAACCATGGTAGGCCACTATCCTACTATCGAAAGTTGATAGG 5109 Query 212 GCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGA 271 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 5108 GCAGAAATTTGAATGAACCATCGCCGGCACAAGGCCATGCGATTCGTTAAGTTATTATGA 5049 Query 272 ATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG 331 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | Sbjct 5048 ATCACCAAGGAGCCCCGAAGGGCATTGGTTTTTTATCTAATAAATACACCTCTTCCGAGG 4989 Query 332 TCGGGGTTTTTAGCAT-----GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386 ||| ||||||||| || | | |||||||| |||||||||| | ||| | ||||||| Sbjct 4988 TCGAGGTTTTTAGTATATACGGAACTAGCTCTAAAATTACCACGTTCATCTAAGTAGTAA 4929 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 |||||||| ||||||||||||||| |||| || ||| ||||| ||||||||| ||||||| Sbjct 4928 GGTACTATTAAATAAACGATAACTAATTTCATAAGCTATTCGTAGTTTCACTATATAGAT 4869 Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 | |||||||||| || || ||||||||||| || ||| |||| |||| Sbjct 4868 TACTTATACTTAAGTATATATAGCTTAATCTTTAAGGAAAGTATATAACTA 4818 Score = 127 bits (140), Expect = 6e-27 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 77 GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 136 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5570 GGTAATTTGCGCGCCTGCTGTCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 5511 Query 137 CGGAATCGAACCCTA 151 |||||| |||||||| Sbjct 5510 CGGAATAGAACCCTA 5496 >seq1804 Length=65490 Score = 230 bits (254), Expect = 7e-58 Identities = 171/199 (86%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAA 362 |||||||||| | | |||||||||||||| |||| || ||||||||||||||||| ||| Sbjct 40393 TTTATCTAATGATT-CACCCCTTCCGAAGCCGGGTTTCTTAGCATGTATTAGCTCAAGAC 40335 Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 ||| || ||||||||| ||||| |||| ||||||||| ||| | ||||||||||||||| Sbjct 40334 TTATCAAGGTTATCCAAGTAGTGAGGTCCTATCAAATCAACTACGACTGATTTAATGAGC 40275 Query 423 CATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAG 482 |||| || ||||| ||||||| |||||||||||||| ||||||| ||||||||||| Sbjct 40274 CATTTGCCGTTTC-----ATAGATTACTTATACTTAGACACGCATGGCGTAATCTTTGAG 40220 Query 483 ACAAGCATATGACTACTGG 501 ||||||||| ||||||||| Sbjct 40219 ACAAGCATACGACTACTGG 40201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510360865536