Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2371 334 6e-87 seq2036 104 2e-17 >seq2371 Length=131994 Score = 334 bits (370), Expect = 6e-87 Identities = 768/1141 (67%), Gaps = 28/1141 (2%) Strand=Plus/Minus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| || || |||||||| || |||| | | || || | || || |||||| | Sbjct 28417 AAAGCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTT 28358 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC-AC 65925 || ||||| || ||||||||||| |||||||||||||| ||||| || | || | || Sbjct 28357 CTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTT-CTTGACGAC 28299 Query 65926 CACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTTTAGGACGATCGGGAGTG 65983 || || || | ||| | ||| ||| ||| || || || ||| Sbjct 28298 AACTTGGCAGA--CCTCGTGAAGCTTCTGGAAGTCATAA-GT-----------GGCAGT- 28254 Query 65984 CCGGACACCA-CAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042 | || || || | | || || || || ||||| | |||||| ||||| | ||| || Sbjct 28253 CTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATC 28194 Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102 ||| || || ||||||||||| || |||| || || || ||||| || | ||| Sbjct 28193 AGGTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATT 28134 Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || ||| || ||||| || ||||| ||||||||||| | |||| | || | || ||||| Sbjct 28133 CTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTC 28074 Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT 66222 ||| | ||| | ||| | || |||||| | ||||| | | | | | ||||| Sbjct 28073 GGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCT-CTTGCGGCCCT 28015 Query 66223 ACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281 | | | ||||| | ||||| | ||||| ||||| | || |||| || Sbjct 28014 TGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCA 27955 Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341 || ||||||| | || ||||||| | ||| ||| | || ||| ||||| || Sbjct 27954 AACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCA 27895 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || ||||| || ||||||||||||||||| ||||| || || || |||||| | | Sbjct 27894 TGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTC 27835 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 |||| || || || | |||||||||||| || | ||||| |||||||| || ||||||| Sbjct 27834 CGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGA 27775 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 ||||||| | || || ||| |||||||| || || || |||||| ||||||| Sbjct 27774 TGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGA 27715 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581 | || || | ||| || |||| ||||| || || || || || ||| | ||| | | Sbjct 27714 AAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCAC 27655 Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 | || || || ||||||||| || || |||||||| || |||| || || | Sbjct 27654 CAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGG 27595 Query 66642 CAC-AATCGGC-CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 ||| |||| | | |||| | | || || |||||| ||| |||| ||| | ||| Sbjct 27594 CACAAATCTTCAAAGTGTC--GTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAG 27537 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | |||||||| |||||| | | ||||| | || | || || || |||| ||||| Sbjct 27536 GAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTG 27477 Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 || ||||| | || ||||| | ||||| || |||||| |||| ||||| | ||||| Sbjct 27476 GGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCC 27417 Query 66820 ATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCT 66878 || || |||| || ||| ||||| | | | ||| || |||||| | | | | Sbjct 27416 GTGTATTCCGACAGCGACA-CGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCAT 27358 Query 66879 TGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAAT 66938 || | | | || || || || |||||||||| ||||||||| ||| || |||| Sbjct 27357 CGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAAAAT 27298 Query 66939 C 66939 | Sbjct 27297 C 27297 Score = 98.7 bits (108), Expect = 8e-16 Identities = 320/480 (67%), Gaps = 18/480 (4%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | | || ||| | || | ||||||||||| || || Sbjct 29141 ATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGT 29082 Query 65137 CTTGAGGCCAGCACGCCAAGCAT-AGAAATGCATCGATGATAATTTT--GCATAATTCGG 65193 ||| || || || | ||| | ||||||||| || |||| || ||| || || Sbjct 29081 CTTAAGACC-CAACTTCCAGCCTGCGAAATGCAT-ACTGGTAATCTTCCCCATGGTT-GG 29025 Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAG 65252 || || || || |||| || ||| ||||| ||| |||| |||||| || |||| Sbjct 29024 ATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG-AACGCACCACGGTCGGCAG 28966 Query 65253 CCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311 |||| | || ||| |||| || || ||||| || |||||||| ||| | | | | Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGG-GCCTTGATA 28907 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTAC 65369 ||| ||| || | || || || | || |||| ||| ||||| || || || Sbjct 28906 TCAGCTGGGATGTTTGGAACGTTTTGAATGGATCCAC--CGTCAGCAATGATACGGTTTT 28849 Query 65370 GCATCGACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGAT 65427 ||| || ||||||| |||| ||| | |||| |||| ||| | |||||| Sbjct 28848 TCATGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGA--GAAGCCATGGATTGAC 28791 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 ||||||||||| || | || ||||| || ||||||||||| ||| || || || Sbjct 28790 AACTTGGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAA 28731 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | | || || || |||||||| ||| ||||||||||| |||||||| | ||| Sbjct 28730 GCACTCGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAA 28671 >seq2036 Length=314316 Score = 104 bits (114), Expect = 2e-17 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGA 61491 ||| || |||||||| || |||||| || |||| | |||| |||| | |||| Sbjct 236109 GAAGGCTGATTGGGCTGTCCGATGGATC--CAAGACAAGGAGTCTACCTTTGCTCAACGT 236052 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || ||||| | || |||||| | || |||||||| || || || | ||||| Sbjct 236051 CTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTC 235992 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||||||||||| ||||| || ||| | ||||| |||||| ||| |||||||| || || Sbjct 235991 TGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGT 235932 Query 61612 GACGAGGG 61619 || ||||| Sbjct 235931 GATGAGGG 235924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555445672240