Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 334 6e-87
seq2036 104 2e-17
>seq2371
Length=131994
Score = 334 bits (370), Expect = 6e-87
Identities = 768/1141 (67%), Gaps = 28/1141 (2%)
Strand=Plus/Minus
Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866
|||| || || |||||||| || |||| | | || || | || || |||||| |
Sbjct 28417 AAAGCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTT 28358
Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC-AC 65925
|| ||||| || ||||||||||| |||||||||||||| ||||| || | || | ||
Sbjct 28357 CTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTT-CTTGACGAC 28299
Query 65926 CACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTTTAGGACGATCGGGAGTG 65983
|| || || | ||| | ||| ||| ||| || || || |||
Sbjct 28298 AACTTGGCAGA--CCTCGTGAAGCTTCTGGAAGTCATAA-GT-----------GGCAGT- 28254
Query 65984 CCGGACACCA-CAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042
| || || || | | || || || || ||||| | |||||| ||||| | ||| ||
Sbjct 28253 CTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATC 28194
Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102
||| || || ||||||||||| || |||| || || || ||||| || | |||
Sbjct 28193 AGGTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATT 28134
Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162
|| ||| || ||||| || ||||| ||||||||||| | |||| | || | || |||||
Sbjct 28133 CTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTC 28074
Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT 66222
||| | ||| | ||| | || |||||| | ||||| | | | | | |||||
Sbjct 28073 GGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCT-CTTGCGGCCCT 28015
Query 66223 ACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281
| | | ||||| | ||||| | ||||| ||||| | || |||| ||
Sbjct 28014 TGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCA 27955
Query 66282 GACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCA 66341
|| ||||||| | || ||||||| | ||| ||| | || ||| ||||| ||
Sbjct 27954 AACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCA 27895
Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401
| || ||||| || ||||||||||||||||| ||||| || || || |||||| | |
Sbjct 27894 TGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTC 27835
Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461
|||| || || || | |||||||||||| || | ||||| |||||||| || |||||||
Sbjct 27834 CGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGA 27775
Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521
||||||| | || || ||| |||||||| || || || |||||| |||||||
Sbjct 27774 TGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGA 27715
Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581
| || || | ||| || |||| ||||| || || || || || ||| | ||| | |
Sbjct 27714 AAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCAC 27655
Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641
| || || || ||||||||| || || |||||||| || |||| || || |
Sbjct 27654 CAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGG 27595
Query 66642 CAC-AATCGGC-CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699
||| |||| | | |||| | | || || |||||| ||| |||| ||| | |||
Sbjct 27594 CACAAATCTTCAAAGTGTC--GTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAG 27537
Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759
| |||||||| |||||| | | ||||| | || | || || || |||| |||||
Sbjct 27536 GAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTG 27477
Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819
|| ||||| | || ||||| | ||||| || |||||| |||| ||||| | |||||
Sbjct 27476 GGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCC 27417
Query 66820 ATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCT 66878
|| || |||| || ||| ||||| | | | ||| || |||||| | | | |
Sbjct 27416 GTGTATTCCGACAGCGACA-CGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCAT 27358
Query 66879 TGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAAT 66938
|| | | | || || || || |||||||||| ||||||||| ||| || ||||
Sbjct 27357 CGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAAAAT 27298
Query 66939 C 66939
|
Sbjct 27297 C 27297
Score = 98.7 bits (108), Expect = 8e-16
Identities = 320/480 (67%), Gaps = 18/480 (4%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||||||||| | | || ||| | || | ||||||||||| || ||
Sbjct 29141 ATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGT 29082
Query 65137 CTTGAGGCCAGCACGCCAAGCAT-AGAAATGCATCGATGATAATTTT--GCATAATTCGG 65193
||| || || || | ||| | ||||||||| || |||| || ||| || ||
Sbjct 29081 CTTAAGACC-CAACTTCCAGCCTGCGAAATGCAT-ACTGGTAATCTTCCCCATGGTT-GG 29025
Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAG 65252
|| || || || |||| || ||| ||||| ||| |||| |||||| || ||||
Sbjct 29024 ATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG-AACGCACCACGGTCGGCAG 28966
Query 65253 CCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311
|||| | || ||| |||| || || ||||| || |||||||| ||| | | | |
Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGG-GCCTTGATA 28907
Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTAC 65369
||| ||| || | || || || | || |||| ||| ||||| || || ||
Sbjct 28906 TCAGCTGGGATGTTTGGAACGTTTTGAATGGATCCAC--CGTCAGCAATGATACGGTTTT 28849
Query 65370 GCATCGACTCTGACCACAAACCCAAATCGATAAGAT-GTTGAACCAAGTGA-CGATTGAT 65427
||| || ||||||| |||| ||| | |||| |||| ||| | ||||||
Sbjct 28848 TCATGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGA--GAAGCCATGGATTGAC 28791
Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487
||||||||||| || | || ||||| || ||||||||||| ||| || || ||
Sbjct 28790 AACTTGGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAA 28731
Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
| | || || || |||||||| ||| ||||||||||| |||||||| | |||
Sbjct 28730 GCACTCGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAA 28671
>seq2036
Length=314316
Score = 104 bits (114), Expect = 2e-17
Identities = 137/188 (73%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG--CTACATTTGGTGAACGA 61491
||| || |||||||| || |||||| || |||| | |||| |||| | ||||
Sbjct 236109 GAAGGCTGATTGGGCTGTCCGATGGATC--CAAGACAAGGAGTCTACCTTTGCTCAACGT 236052
Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551
| | || ||||| | || |||||| | || |||||||| || || || | |||||
Sbjct 236051 CTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTC 235992
Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611
||||||||||| ||||| || ||| | ||||| |||||| ||| |||||||| || ||
Sbjct 235991 TGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGT 235932
Query 61612 GACGAGGG 61619
|| |||||
Sbjct 235931 GATGAGGG 235924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397555445672240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |