Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypocrella_20siamensis_20[genbank_20GCA_5F000731825.1_202014-07-18] 2,034 sequences; 28,856,456 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1835 356 8e-96 >seq1835 Length=10949 Score = 356 bits (394), Expect = 8e-96 Identities = 257/292 (88%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2359 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 2418 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 2419 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 2478 Query 127 GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 ||||||||||||||||| || |||||| ||| | | ||| |||| ||||||||||| Sbjct 2479 GGCCCGCGAAGGACCTTGAAATCCAGAAGTTGGAC-GAGAA-TCCAGCCCCGCTTCATTG 2536 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| | Sbjct 2537 AATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCT 2593 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||| | ||| |||||||| ||| |||||||||||||||||| Sbjct 2594 ATTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAAC 2645 Score = 257 bits (284), Expect = 5e-66 Identities = 144/145 (99%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3095 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 3154 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3155 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 3214 Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441 ||||||||||||||||||||||||| Sbjct 3215 ACGAGGCATTTGGCTACCTTAAGAG 3239 Score = 178 bits (196), Expect = 4e-42 Identities = 101/103 (98%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 3649 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 3708 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3709 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 3751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635166740032