Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq563 385 2e-104 seq545 347 5e-93 >seq563 Length=1697 Score = 385 bits (426), Expect = 2e-104 Identities = 336/409 (82%), Gaps = 9/409 (2%) Strand=Plus/Minus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct 403 AGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATTTCTT 344 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 CTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 284 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||| || Sbjct 283 AGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGAC 224 Query 208 CAGA-CTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAG 265 |||| ||| ||| | | ||| || | ||| || |||||||| | | | || Sbjct 223 CAGACCTTTTCCG-GGCGGATCATCCAGTGTTCTC-GCTGGTGCACTTCGCCCGGTTTAG 166 Query 266 GCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGT 325 ||||||||| | || | |||||||| || ||||| || | | ||| ||| || Sbjct 165 GCCAGCATCGGTTCTCTTAGGGGGATAAAGACCTTGGGAACGTAG--CTCTTTCGGGAGT 108 Query 326 GTTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGAT 384 |||||||||| |||| ||| | || | |||| |||| ||||||| |||||||||| Sbjct 107 GTTATAGCCCCTGGTGTAATAC--CCTTCAGGGGACCGAGGACCGCGCTTCGGCTAGGAT 50 Query 385 GCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAG 433 |||||||||||||| || | || ||||||||| |||||||||||||||| Sbjct 49 GCTGGCGTAATGGTCGTCAACGACCCGTCTTGAAACACGGACCAAGGAG 1 >seq545 Length=1757 Score = 347 bits (384), Expect = 5e-93 Identities = 225/247 (91%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 437 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTG 496 ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 3 AACATTGGTGCGAGTGTTTGGGTGTTAAACCCTCACGCGTAATGAAAGTGAACGGAGGTG 62 Query 497 GGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGA 556 || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 63 AGAGCCCGTACGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGA 122 Query 557 GCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA 616 |||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 123 GCATCACTGTTCGGACCCGAAAGATGGTGAACTATGCGTGGATAGGGTGAAGCCAGAGGA 182 Query 617 AACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||||||||||||||||||||||||||| ||||||||||||||||||||| || | || Sbjct 183 AACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATCTGCGCATG 242 Query 677 GGGGCGA 683 ||||||| Sbjct 243 GGGGCGA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079980716450