Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CI-4A_20[genbank_20GCA_5F002120315.1_202017-05-11] 899 sequences; 37,704,138 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq555 242 6e-62 seq25 194 3e-47 >seq555 Length=1722 Score = 242 bits (268), Expect = 6e-62 Identities = 228/284 (80%), Gaps = 16/284 (6%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 1639 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1582 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1581 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1522 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | |||| ||| | ||||| ||||||||||||||||||||| || | Sbjct 1521 GAACGCGGTGATAC-CTCCCACACGTTGTAGTTGGATACGAATAGGCTTCGGCCTCGCAT 1463 Query 181 CTTAGCAGGCCGGCAACGGGCGTC--CCGCGGAAGCG----CGGGGCGCTCAGCTGGCGG 234 ||||| ||| | || | || |||||| | |||| | | ||| Sbjct 1462 CTTAGGTGGC---GATTGGTCCTCTATTTCGGAAGAGATTTAGGGG----TATTTCGCGT 1410 Query 235 ATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| ||||| | || ||| || ||||||||||||||||||| Sbjct 1409 ATTGTAATTTTAGCACGCGTGGGATTAAATCCTTTGCAGACGAC 1366 >seq25 Length=410318 Score = 194 bits (214), Expect = 3e-47 Identities = 123/131 (94%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 129 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 72 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 71 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 12 Query 121 GAACGGGGTGA 131 ||||| ||||| Sbjct 11 GAACGCGGTGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819192865536