Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1023 165 3e-38 seq2753 134 6e-29 seq226 102 3e-19 >seq1023 Length=3215 Score = 165 bits (182), Expect = 3e-38 Identities = 116/130 (89%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 555 GAGCA-TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| |||| | | ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 2496 GAGCAGTAGC-GCTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGCCAGA 2438 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||| ||||||||||||||| |||||| ||| ||||||||||| ||||| || |||||| Sbjct 2437 AGAAATTCTGGTGGAGGCTCGTAGCGGTGCTGACGTGCAAATCGCTCGTCGAACTTGGGT 2378 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 2377 ATAGGGGCGA 2368 Score = 134 bits (148), Expect = 6e-29 Identities = 128/161 (80%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| || | |||||||||| ||||||| | || ||||||| || || || |||||| Sbjct 2972 CGAGTCGGGTAGCTTGGGAATGCTGCTCTAA-TCGGTGGTAAATCTCATCGAAGGCTAAA 2914 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| || |||||||||||||||||| |||| ||||| |||||||||||||| | Sbjct 2913 TACTGGTAGGAAACCGATAGCGCACAAGTACCGTGAGGGAAAGGTGAAAAGCACTTTGAA 2854 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| | | | ||| || ||||| ||| ||||||||| Sbjct 2853 AAGAG-GGTGACAAGAACCTGAAACCGTTACGAGGGAAGCG 2814 >seq2753 Length=609 Score = 134 bits (148), Expect = 6e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||| Sbjct 508 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAAT 567 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 ||||| |||||||||||||| ||||||| |||| ||||| Sbjct 568 ATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAG 609 >seq226 Length=38918 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 599 TAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658 ||||| ||||||||||||| |||||| ||||||| ||||||||||| | ||||| |||| Sbjct 7216 TAGGGCGAAGCCAGAGGAAGCTCTGGCAGAGGCTCACAGCGGTTCTGACATGCAAGTCGA 7157 Query 659 TCGTCAAATTTGGGTATAGGGGCG 682 ||||||||| | ||||| |||||| Sbjct 7156 TCGTCAAATATAGGTATGGGGGCG 7133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079930223150