Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 352 2e-92 seq6 111 1e-19 >seq5 Length=1316942 Score = 352 bits (390), Expect = 2e-92 Identities = 1225/1880 (65%), Gaps = 50/1880 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | | ||||| |||| ||| | || ||||||||||| || Sbjct 715484 ATCAACAGTGAACTGGATGGGAGCGGCAGCAGCCTGGGTGCGTAGGTAGTACATGCCAGT 715425 Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGC 65194 |||||| || ||| ||| || || ||||| | || |||| || | | | || Sbjct 715424 CTTGAGACCGAGCTT-CCAGCCAGCAAAGTGCAT-GCTGGTAATCTTACCCATGGTAGGG 715367 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || || || || || | ||||| |||||| ||| | ||| || || |||| | Sbjct 715366 TCCTTCATGTGGATGTTGAGGGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCAGAC 715307 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 || | |||| |||| || |||||||| || ||||||||||| ||| | | || Sbjct 715306 ATCTGGATGACTTGACGCTGGGAAATCTCCCACACAGTCTTGTACAGA-GACTTGATATC 715248 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | ||||| | |||||||||| ||||||| ||||| || || || ||| Sbjct 715247 AGCGGGAATGTTGGGGATGTCCTGGATGGAACCACCCTCGGCAATGATTCGGTTCTTCAT 715188 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATG-TTGA--ACCAAGTGACGATTGATGAC 65430 | || |||||||| |||| ||||| || | |||| | | || | |||| || Sbjct 715187 GGCATCAGACCACAAGCCCATATCGACTAGGTCCTTGAGGAGCCAGGGG---TTGACAAC 715131 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||||| || | ||| ||||| || || ||||| || || ||| |||||| | Sbjct 715130 CTGGAACTCACCAGCCAGGACACGGCGCTGGTAAATGTTTGAGGTATAGGGCTCAAAGCA 715071 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 ||| |||||||||| || || | |||| || || |||||||| |||| | ||| Sbjct 715070 TTCGTTGTTGCCTAGGATCTGCGAAGTACTGGCCGTAGGCATGGGGGCGAGGAGCAAGCT 715011 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACATCGGTT 65609 ||| || | || | | | | | | ||| | | || ||||||| ||| | | | Sbjct 715010 GTTGCGAAGGCCATGCTCCTTGACCTGCTCACGGAGAGTC-TCCCAGTCCCAAA---GGT 714955 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 | | | | || ||| |||||| || || ||| | || | || || || | Sbjct 714954 CAGAG--GGCTTC-ACGTTCCACATGTCAAACTGAAGGATGCCCTCAGAAGCGGGAGAGC 714898 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGCTGGTCTCGAGTGCG 65728 | || | ||| |||| ||||||||| || || || | | || || || Sbjct 714897 CCTTAAAGGTGGAGTAGGGGCCCTGCTCCTTGGCGAGCTGCACGGAGGCAGTC-AGGGCA 714839 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 || || |||||||| || || | || || ||||| |||||| | |||| | Sbjct 714838 GCGTGGTAGATGGTCTCAAATATCTGCTTGTTCAGCTCACGAGCCTCAGGGGACTCGAAG 714779 Query 65789 GGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 ||||| | | || || | ||||| ||||| || || |||| || ||||| | Sbjct 714778 GGCATGCGAAGAGCGAGGAAGGCATCGGCAAGACCCTGGACACCAACGCCAATGGGTCTG 714719 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 || |||| ||| | |||||| || ||||||| |||| ||||| || Sbjct 714718 TGGCGCATGTTGCTGTTGCGAGCCTCAATGACGGGGTAGTGGTTGACGTCGATGATCTTG 714659 Query 65909 TTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTT 65967 ||||| ||||| || || || || | ||| ||| | | ||| || | Sbjct 714658 TTCAAGTTGCGGACAACGACCTGGGTGACTTCGT-GCAGCTTCTTGAAGTCG-------T 714607 Query 65968 AGGA-CGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 || | | ||| | ||| | |||||| || || || || || || ||||| Sbjct 714606 AGCAGCCCTCGTTGTAGT--------CGACAAACGAAGGCAGAGCCAGGGAGGCAAGGTT 714555 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 |||||||| | ||| ||||| || ||||| | || || ||||| || || || Sbjct 714554 ACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCT 714495 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 ||| |||||||||| |||| || || |||||||| |||||||| |||||||||| ||| Sbjct 714494 GCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCCTTGTACAGCAT 714435 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | | || ||||||||||| ||| | ||| | |||||||| ||| | | ||||| Sbjct 714434 GAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTACCACAACTTCTGAGCCTT 714375 Query 66205 CACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 || || | | | |||| | || | ||||| | ||||| | | ||||| | Sbjct 714374 CATGGT-CTTGCGACCCTTGCCAAGCTTCTCGTACTTCTCGTATAAGGCCTCGAACTCCT 714316 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 | || | |||| || | || |||| || || |||||||| | |||||| || | Sbjct 714315 CGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGT 714256 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 || || || || ||| || |||||||| ||||| ||||| ||| |||||||| | Sbjct 714255 TCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGG 714196 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || ||| || ||||||| || ||||||| ||| |||||||| |||| || || | Sbjct 714195 CGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGT 714136 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| || || |||||||||||||| | ||| || ||| |||||| |||||||||| Sbjct 714135 GCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGT 714076 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 | ||||| |||||||||||||| | ||| || | || ||||| || | || |||| Sbjct 714075 ATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGG 714016 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 | ||| | ||| || || || || ||| |||| | || ||||| ||||| || | Sbjct 714015 TACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACCGATACCGCCAG 713956 Query 66624 CCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 || |||| ||||| ||||| || | | |||| | || || || ||| || Sbjct 713955 CCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTC--ATAGATACCCTCGATGCTATC 713898 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 |||| ||| | ||| |||| ||| || ||||| | || || | || ||| Sbjct 713897 CTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAA 713838 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 |||||||| | ||| || ||||| | || |||||| ||||| ||||| | ||| Sbjct 713837 AAGGGTGGGCGAAGCATGGGTAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGAC 713778 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCC 66860 | ||||||| ||||| || || | | |||| ||||| | | || || || | Sbjct 713777 ACGCTCAATGTCATCGCCCCAGATGCCAACAGACACA-CGCATGATCATGTGCTGCGGTC 713719 Query 66861 GTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920 | || || | | | | || | | | || || || ||||| ||||||| ||| | Sbjct 713718 GCTCAACAATCTTGCCGTCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGA 713659 Query 66921 AGTACGAGTAATTGAAATCG 66940 |||| ||| ||||| ||| Sbjct 713658 AGTATTGGTAGTTGAAGTCG 713639 >seq6 Length=1299473 Score = 111 bits (122), Expect = 1e-19 Identities = 204/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | ||||||| | ||| || Sbjct 1189454 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAGGAGATTGATCTG 1189395 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || || || | | || ||| | || | | || ||||| ||| | Sbjct 1189394 TCGAAGGATCTTCACGATTGGAACAACCGCCTGACTGCCGACGAACAGTTCTTCGTCTCT 1189335 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || | ||||| ||||| ||||| || || || |||||||| ||||| | | ||| | Sbjct 1189334 CACATCTTGGCCTTCTTCGCCGCATCTGATGGCATCGTCAACGAGAACCTCGTTGAAAGA 1189275 Query 61264 TTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || | ||||| || | | ||||| || || ||||||||||||||||| || Sbjct 1189274 TTCA-GCGGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 1189216 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| Sbjct 1189215 GGAGAACATCCACTCTGAGACCTACTCCCTACTCATTGACACTTACATCAAGGAGC 1189160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552238043920