Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq23 632 8e-179 >seq23 Length=4176071 Score = 632 bits (700), Expect = 8e-179 Identities = 549/671 (82%), Gaps = 9/671 (1%) Strand=Plus/Plus Query 15 CCTAGCCGT-GTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG 73 || |||||| ||| ||||||||| ||||||||||| |||||||||||| ||||||||||| Sbjct 668813 CCGAGCCGTTGTGTAGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGG 668872 Query 74 GAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTG 133 |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 668873 GAGGTATATCTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTG 668932 Query 134 ATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 668933 ATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGG 668992 Query 194 GAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCC-CTCGGCCGGTGCACT 252 |||||||||| |||||||||| | | || | | | || ||| || || ||| Sbjct 668993 GAAGCGCTTGTGACCAGACTTGTGCCCGGTGAATTAGCTGGTGTTCTCA-CCAGTCGACT 669051 Query 253 CTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCC 312 | | | | ||||||||||||| | | | ||| ||| | ||||||||||| Sbjct 669052 TTGCCG-GCTCAGGCCAGCATCGGTTTGTTATTGGGGAGAAAAACGATGGGAATGTGGCT 669110 Query 313 CCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC 372 || |||||| | |||||||||||| || ||| | | | | || |||| |||||| Sbjct 669111 CC-TTCGGGAG-TGTTATAGCCCGCCGTATAATACCCTTTGGCAG-ACCGAGGACCGCGC 669167 Query 373 TCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGA 432 | || |||||||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 669168 ATCTGCATGGATGCTGGCGTAATGGTCACCAGCGACCCGTCTTGAAACACGGACCAAGGA 669227 Query 433 GTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGA 492 ||| | | | | ||| ||||||||||||| |||||| | |||| ||| || ||||||| | Sbjct 669228 GTCAACCTTATGTGCAAGTGTTTGGGTGTTAAACCCCTACGCGGAATTAACGTGAACGTA 669287 Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 |||| || || | ||| ||| ||||||||||| ||||||| |||||||||||||||| Sbjct 669288 GGTGAGAGCC--TTCGGGCGCATCATCGACCGATTCTGATGTTCTCGGATGGATTTGAGT 669345 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||||| | | | |||||||||||| |||||||||||| || ||||||||||||||| Sbjct 669346 AAGAGCACACAGGGTTGGACCCGAAAGAAGGTGAACTATGCTTGTATAGGGTGAAGCCAG 669405 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | Sbjct 669406 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGAG 669465 Query 673 TATAGGGGCGA 683 || ||||||| Sbjct 669466 CATGGGGGCGA 669476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999377950