Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 320 1e-82 seq9 206 2e-48 >seq2 Length=2210479 Score = 320 bits (354), Expect = 1e-82 Identities = 1213/1880 (65%), Gaps = 54/1880 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| | ||||| |||| ||| | || ||||||||||||||| Sbjct 1078781 TCAACAGTGAACTGGATAGGCGCCGCAGCAGCCTGGGTACGGAGGTAGTACATGCCGGTC 1078722 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| ||| ||| | ||| ||||| | || | || |||| | | || || Sbjct 1078721 TTGAGACCAAGCTTCCAGCCGGTGAAGTGCAT-GCTGGTGATCTTGCCCATCGTGGGGTC 1078663 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || |||| ||||| ||| || ||| || ||||||||| |||||||| Sbjct 1078662 CTTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGATCGGCAGCCAT 1078603 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAA 65315 | | || | || || || |||||||| ||||||||||| | | | | ||| Sbjct 1078602 CTGCACGACAGTGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGA-GCCTTGATGTCAG 1078544 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATC 65374 || || |||||| ||||| || || | || ||||| ||||| || |||| Sbjct 1078543 CAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCG-GCAATGATGCGGTTCTTCATC 1078485 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || || ||||||| || | |||| |||| | | ||| | |||| || ||| Sbjct 1078484 GAGTCCGACCACAGGCCAAGGTCGACTAGATCGCGGAGCAACCACGGGTTGACCACCTGG 1078425 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 ||||| || | || ||||| || ||||| ||||| ||| || |||||| | || Sbjct 1078424 AACTCTCCAGCAAGCACACGGCGCTGGTAGATATTGGAGGTGTACGGCTCAAAGCACTCG 1078365 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 ||||||| ||||| || | ||| ||||| ||||||||||| | || || ||| Sbjct 1078364 TTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTG 1078305 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 || | |||| | | || | | || ||||||| ||| | ||| | | Sbjct 1078304 CGAACACCGTGAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGA--GGTCGGTGG 1078247 Query 65615 TC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | ||||| | ||||| || |||||| | || | | | || || || Sbjct 1078246 GCTTGACATTC------CACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCT 1078193 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT-GGTCTCGAGTGCGGCA 65731 | | ||| ||||||||||||||| | | || | || | || || || Sbjct 1078192 CATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTC-CACCGAGGCCGACAGAGCAGCG 1078134 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 || ||||||||||| || | | || || || || ||||| || ||| | ||| Sbjct 1078133 TGGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGC 1078074 Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 || | || || |||| ||||| ||||| ||||| |||| ||||||||| || || Sbjct 1078073 ATGCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGAACACCAACACCGATGGGGCGGTGG 1078014 Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 |||| ||| | ||||| || || ||||||| |||| ||| || ||||| ||| Sbjct 1078013 CGCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTC 1077954 Query 65912 AAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTTCGAAATCAAAATGTTTA 65968 | ||||| ||||| || | | || ||| || | || || ||| | Sbjct 1077953 AGGTTGCGGACAACCAC---CATGGTGACCTCGTGCAGCTTCTCAAAGTCATAC------ 1077903 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 ||| | || | | | || | ||| || || || || || |||||||| Sbjct 1077902 --ACGCCCT----TGTTGTAGTCAACGTAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCAC 1077849 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 ||||| | ||| || |||||| ||||| | || || |||||||| || || ||| Sbjct 1077848 ACAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCTGTGCACAGGTTGGAGCTGCGA 1077789 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 ||||| |||| |||| || || |||||||| ||||| |||||||||| |||| | Sbjct 1077788 ATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAG 1077729 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || |||||||||| || | ||| | |||||||| ||| || | ||||| | Sbjct 1077728 GGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTGATG 1077669 Query 66209 GTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 || | | | || | ||| | ||||| | ||||| ||| ||||| || || Sbjct 1077668 GT-CTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCC 1077610 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 | |||| |||| || |||| || || |||||||| | ||| || | | || Sbjct 1077609 GTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTT 1077550 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 || || || ||| || ||||| || ||||| || || ||| | ||| | || || Sbjct 1077549 CTCGACTCGCTTCATGAAGAGATCGGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCG 1077490 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 |||||| | || ||||| ||||||| || | |||||| || | |||||| ||||| Sbjct 1077489 GACCTCCTCCTTTCCATGATTCTTGCGCAGATCCATGAACTCGAACACGTCGGCGTGCCA 1077430 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || || ||||||||||| || | ||| || ||| ||| || ||||| || ||||| Sbjct 1077429 CGGCTCGAGGTAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCGCCCTGGTCAACATAGCG 1077370 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| |||||||| || || | ||| || | || || || || |||||||||| || Sbjct 1077369 GGCGGTGTTGTTGAACACGCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCC 1077310 Query 66568 GTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGT 66627 | | || || || || || ||| ||| ||||| |||||||| ||||| ||| | Sbjct 1077309 GGCAATATAAGAACCGGTAGCACGGATACGGTGGACATTGAGACCAATGCCACCAGCCAT 1077250 Query 66628 CTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCC 66685 ||| ||||| || || || | |||| | || || |||||| |||| || Sbjct 1077249 CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC--ATAGATACCCTCAATGCTGTCATCC 1077192 Query 66686 TTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGG 66745 || ||| | ||| |||| || || |||| | || || | || ||||||| Sbjct 1077191 TTCATGTCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGG 1077132 Query 66746 GTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCA 66805 ||||| | || || || ||| | | || ||||| | ||||| |||||||||||| Sbjct 1077131 GTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACACGC 1077072 Query 66806 TCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865 || | ||| || || || || | ||| ||||| | | || || || || ||| Sbjct 1077071 TCGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCG 1077012 Query 66866 ACCA----GCCG--ATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCA 66919 || | |||| | ||||| || | ||| || || || |||||||||| ||| Sbjct 1077011 ACAATCTTGCCGTCAAGCTTGA---GC---AGGTAAGACCGCTCTAGGGTCTTGAAGCCA 1076958 Query 66920 AAGTACGAGTAATTGAAATC 66939 |||||| ||| ||||| || Sbjct 1076957 AAGTACTGGTAGTTGAAGTC 1076938 >seq9 Length=477563 Score = 206 bits (228), Expect = 2e-48 Identities = 573/862 (66%), Gaps = 34/862 (4%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||||| |||||| |||| || Sbjct 52250 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 52191 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAA- 61202 ||||| || || |||||||| | || || | || ||| | | |||| | | Sbjct 52190 TCCAAGGATATCCATGACTGGAACAACCGCCTAAC---CGATGACGAGCGTTTCTTCATC 52134 Query 61203 ----ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGG 61258 |||| | ||| | ||||| ||||| || ||||| || ||||| ||||| | | | Sbjct 52133 TCGCACAT-TCTTGCC-TTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCG 52076 Query 61259 AACGTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 | |||||| |||| | ||||||| ||| | ||||| || || ||||||||||||||||| Sbjct 52075 AGCGTTTCAGCGCCG-AGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATC 52017 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 |||||||| ||||||| |||| ||| | ||||| || || ||||||| |||| Sbjct 52016 ATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAG 51957 Query 61378 CGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG-- 61433 | || | | | || | | ||||| ||||| || || || || | | | || Sbjct 51956 CCCTCGCA--GCGCACCTTCCTCTTCAACGCCATTGACACCATCCC--CTG-CATCCGCA 51902 Query 61434 -GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACG 61490 ||| || || |||||| || ||||| ||| |||| | | | | || | || Sbjct 51901 AGAAGGCCGACTGGGCCATCCGCTGGAT--TCAGGACAAGGAGTCGTCCTACGGCCAGCG 51844 Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550 || | || ||||| | |||||||| | || ||||| || | || | | ||||| Sbjct 51843 CCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTT 51784 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACG 61610 ||| | ||||| || || | |||||||| ||||||||| ||| ||| |||| || || Sbjct 51783 CTGGATCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCG 51724 Query 61611 CGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||||| |||| || || || |||| ||| | | || | | || Sbjct 51723 TGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTC---TCCCACCTCAAGCACCG 51667 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTC-GTGAGGCGGTAACTATCGAACAGGAAT 61729 || |||| ||| |||| | || || || || | || || ||||| | Sbjct 51666 CCCCAGCAAGGA-CGTCATCCAGAGAATCATCACCGATGCCGTGGCCATTGAGCAGGAGT 51608 Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | | || || ||| ||||| | | || | |||||||| || ||| ||||| Sbjct 51607 TCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 51548 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATA 61849 | || || || || |||||||| ||| |||| | | | || | | | |||| || Sbjct 51547 ACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTCGGCAACGACAAGGTCTACAAGG 51488 Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 | | ||||| || || |||||||| | || ||||||| |||||||| || || || | Sbjct 51487 CCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTG 51428 Query 61910 AGAAACGTGTAGGCGACTATCA 61931 |||| ||||| |||||||| || Sbjct 51427 AGAAGCGTGTTGGCGACTACCA 51406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567859484560