Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20capensis_20[genbank_20GCA_5F001510575.1_202016-01-11] 29 sequences; 35,537,816 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq3 116 2e-20 >seq3 Length=993733 Score = 116 bits (128), Expect = 2e-20 Identities = 352/531 (66%), Gaps = 31/531 (6%) Strand=Plus/Minus Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698 ||||||||||| | | || |||||||||| ||||||| || || ||||| | || Sbjct 450014 GGCGCCGTAGGCGATCAGACAGTCGCGCTCCATCTCGCCCAGCCGCAGGCCGCCCTCGCG 449955 Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTG 448758 | || |||||| || ||||| ||||| ||| || | ||| ||| || ||||| ||| Sbjct 449954 CGACCGGCCCTCCGTCGGCTGGCGCGTCAGGCTCGCGCGCGGGCCCGTCGACCGCGAGTG 449895 Query 448759 CATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACATG-- 448816 |||||| ||| ||| ||||| || | |||| || ||| ||| ||| | | ||| Sbjct 449894 CATCTTGTCCTGCACCATGTGCTTCAGCCGCTGGTAGTAGATCGGCCCGTTGTAGATGTA 449835 Query 448817 CGGCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTC 448875 || | | || | |||||| || || ||| ||| | ||| |||||||| | | Sbjct 449834 CGCCTC--CAGCGGCTCGCCGGTGATCCCCGACGTGAAG-TAGTCCTTGCCCTCC--CAC 449780 Query 448876 GATCATGCCCCTCTCCTCCATGTAGTC----CATGAGCTCGGCCA--------CGGAGAG 448923 || | ||| | || ||| | | | ||| |||| || |||| | Sbjct 449779 GAGAA-GCCGTGCGCCACCA-GCACCCGCCCCATCTCCTCGACCGGGTGCGACCGGAACG 449722 Query 448924 GTCCGAAAAGGCCGTGCCGTCCT-GCGGCAAGCC-GCTCTCACAGCCCGTGATGGCCTGG 448981 || || ||||| ||||| ||| | || || | || || || || | Sbjct 449721 CGTCGCCAAAGCCGTA--GTCCTTGCGCCCGTCCAGCACCGACG--CCTTGCCGGTC--- 449669 Query 448982 AGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATG 449041 ||| ||||| || | || || ||||||||||||||| || | ||||||||||||||| Sbjct 449668 AGGCACTCGATCAGCTTGCCGACCGTCATGCGCGACGGGAAGCCGTGCGGGTTCATGATG 449609 Query 449042 ATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCG 449101 ||||||||| ||| | || ||| |||| |||||| ||| ||| | | |||| Sbjct 449608 ATGTCGGGCACAATGCCCGAGTCGGAGAACGGCAGGTCCTCCTGGTCGACAATGATGCCG 449549 Query 449102 TTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 ||||||||||| |||||||| |||||||||| ||| |||| ||| Sbjct 449548 ACCACGCCCTTCTGCCCGTGGCGCGACGAGAACTTGTCGCCCAGCTCCGGC 449498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738406496142