Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq60 289 2e-73 seq58 228 6e-55 >seq60 Length=1285956 Score = 289 bits (320), Expect = 2e-73 Identities = 1204/1879 (64%), Gaps = 52/1879 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| || | ||||| |||| ||| | || ||||||||||||||| Sbjct 692458 TCAACAGTGAACTGAATAGGCGCCGCAGCAGCCTGGGTACGGAGGTAGTACATGCCGGTC 692517 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| ||| ||| | ||| ||||| | || | || |||| | | || || Sbjct 692518 TTGAGACCAAGCTTCCAGCCGGTGAAGTGCAT-GCTGGTGATCTTGCCCATCGTGGGGTC 692576 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || |||| ||||| ||| || ||| || |||||| || || ||||| Sbjct 692577 CTTCATGTGGATGTTCAGAGACTGCGACTGGTCAATGAAAGCACCACGGTCGGCTGCCAT 692636 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAA 65315 | | | | || || || |||||||| ||||||||||| | | | | ||| Sbjct 692637 CTGCACAACAGTGCGCTGGGAAATTTCCCAGACCGTCTTGTACAGA-GCCTTGATGTCAG 692695 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATC 65374 || || |||||| ||||| || || | || ||||| ||||| || |||| Sbjct 692696 CAGGGATGCTGGCAATGTTCTGGATCGAGCCGTTGTCG-GCAATGATGCGGTTCTTCATC 692754 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || || ||||||| || | |||| |||| | | ||| | |||| || ||| Sbjct 692755 GAGTCCGACCACAGGCCAAGGTCGACGAGATCGCGGAGCAACCACGGGTTGACCACCTGG 692814 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 ||||| || | || ||||| || ||||||||||| ||| || |||||| | || Sbjct 692815 AACTCTCCAGCAAGCACACGGCGCTGGTAGATGTTGGAGGTGTACGGCTCAAAGCACTCG 692874 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 ||||||| ||||| || | ||| ||||| ||||||||||| | || || ||| Sbjct 692875 TTGTTGCCAAGAATCTGCGAGGTACTGGCAGTGGGCATGGGAGCCAGCAGCAGACTGTTG 692934 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTAT 65612 || | |||| | | || | | || ||||||| ||| | |||| | Sbjct 692935 CGAACACCGTGAAGCTTGATCTGCTCCTTCAGGCTATCCCAGTCCCAGAGGTCGG--TGG 692992 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | ||||| |||||| || |||||| | || | | | || || || Sbjct 692993 GCTTGACAT------TCCACATGTCAAACTGCAGGATACCCTGAGAGACGGGAGAGCCCT 693046 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 | | ||| ||||||||||||||| | | | || | || || || Sbjct 693047 CATAGGTGGAGTAGGTTCCCTCCTCCTTGGCGATCTCCACGGAGGCCGACAGAGCAGCGT 693106 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 || ||||||||||| || | | || || || || ||||| || ||| | |||| Sbjct 693107 GGTAGATGGTCTCGAAGATCTGCTGGTTCAGCTCCCGAGCCTCGGCGGACTCAAAGGGCA 693166 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 | | || || |||| || |||||||| ||||| |||| ||||||||| || || | Sbjct 693167 TGCGCAGAGCGAGGAAAGCATCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGGC 693226 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 ||| ||| | ||||| || || ||||||| |||| ||| || ||||| |||| Sbjct 693227 GCATGTTGCTGTTGCGAGCCTCGGGCACGGGGTAGTGGTTGACATCAATGATGCGGTTCA 693286 Query 65913 AATTGCGTGTCACCA-CATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAG 65969 ||||| |||| |||| | || || ||| | || || ||| | Sbjct 693287 GGTTGCGGACAACCACCATG---GTGACCTCGTGCAGCTTCTCAAAGTCATA-------- 693335 Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029 ||| | || | | | ||| | ||| || || || || || |||||||| | Sbjct 693336 CACGCCC----TTGTTGTAGTCAACATAGGCGGGCAGAGCGAGGGAGGCCAGGTTGCACA 693391 Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089 |||| | ||| || |||||| ||||| | || || |||||||| || || ||| | Sbjct 693392 CAGCCACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTGGAGCTGCGAA 693451 Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149 |||| |||| |||| || || |||||||| || || |||||||||| |||| | | Sbjct 693452 TGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTACAGCATGAAGG 693511 Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209 | |||||||||| || | ||| | |||||| | ||| || | ||||| | | Sbjct 693512 GGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTTGATGG 693571 Query 66210 TACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 | | | | || | ||| | ||||| | ||||| ||| ||||| || || Sbjct 693572 T-CTTGCGACCGCGACCCTCAGCCTCGTACTTCTCGTACAGGGCCTCGAACTCCTCGCCG 693630 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 | |||| |||| || |||| || || |||||||| | ||| || | | || Sbjct 693631 TAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCGGCGTTCTTC 693690 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || ||||| ||| || |||||||| ||||| || || ||| | ||| | || || Sbjct 693691 TCGACACGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAAATCTCTGGCGCGG 693750 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 |||||| | || || || ||||||| || | |||||| || | ||||| ||||| Sbjct 693751 ACCTCCTCCTTTCCATGGTTCTTGCGCAGATCCATGAACTCGAACACATCGGCGTGCCAC 693810 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 || || || |||||||| || | ||| || ||| |||||| ||||| || ||||| Sbjct 693811 GGCTCGAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCAACATAGCGC 693870 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 ||| |||||||| || || | ||| || | || || || || |||||||||| ||| Sbjct 693871 GCGGTGTTGTTGAACACTCGAAGCATGGGGATGATACCATTGGACGTGCCATTGGTTCCG 693930 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 | || || || || || ||| ||| ||||| |||||||| || || ||| || Sbjct 693931 GCAATATAAGAACCAGTAGCACGGATACGGTGGACATTGAGACCAATGCCGCCAGCCATC 693990 Query 66629 TTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 || ||||| || || || | |||| | || || |||||| |||| ||| Sbjct 693991 TTGGAGATCATGGCGCAGGTCTTGAGGGTGTC--ATAGATACCCTCAATGCTGTCATCCT 694048 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 | || | ||| |||| || || |||| | || || | || |||||||| Sbjct 694049 TTATATCAACCAGGAAGCACGACGAGAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGG 694108 Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 |||| | || || || ||| | | || ||||| | ||||| ||||| ||||| | Sbjct 694109 TGGGGGAGGCATGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCAATGACGCGCT 694168 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGA 66866 | | ||| || || || || | ||| ||||| | | || || || || |||| Sbjct 694169 CGACGTTGTCTCCCCAGATGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCGA 694228 Query 66867 CCA----GCCG--ATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920 | | |||| | ||||| || | ||| || || ||||||||||||| |||| Sbjct 694229 CAATCTTGCCGTCAAGCTTGA---GC---AGGTAAGACCGCTCCAGGGTCTTGAAGCCAA 694282 Query 66921 AGTACGAGTAATTGAAATC 66939 ||||| ||| ||||| || Sbjct 694283 AGTACTGGTAGTTGAAGTC 694301 >seq58 Length=769140 Score = 228 bits (252), Expect = 6e-55 Identities = 578/862 (67%), Gaps = 34/862 (4%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||||| |||||| |||| || Sbjct 627644 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACGGCCGAGGAGATCGACCTG 627703 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAA- 61202 ||||| || || |||||||| | || | || || ||| | | |||| | | Sbjct 627704 TCCAAGGATATCCATGACTGGAACAACCGCCT---GAACGATGACGAGCGTTTCTTCATC 627760 Query 61203 ----ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGG 61258 |||| | ||| | ||||| ||||| || ||||| || ||||| ||||| | | | Sbjct 627761 TCGCACAT-TCTTGCC-TTCTTCGCCGCGTCTGACGGCATTGTCAACGAGAACCTGGTCG 627818 Query 61259 AACGTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 | |||||| |||| | ||||||| ||| | ||||| || || ||||||||||||||||| Sbjct 627819 AGCGTTTCAGCGCCG-AGGTGCAGGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATC 627877 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 |||||||| ||||||| |||| ||| | ||||| || || ||||||| |||| Sbjct 627878 ATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATTGACACCTACATCAAGGAG 627937 Query 61378 CGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG-- 61433 | || | | | || | | ||||| ||||| || || || || | | | || Sbjct 627938 CCCTCGCA--GCGCTCGTTCCTCTTCAACGCCATTGACACCATCCC--CTG-CATCCGCA 627992 Query 61434 -GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACG 61490 ||| || || |||||| || ||||| |||| |||| | | | | || | || Sbjct 627993 AGAAGGCCGACTGGGCCATCCGCTGGAT--CCAGGACAAGGAGTCGTCCTACGGCCAGCG 628050 Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550 || | || ||||| | |||||||| | || ||||| || | || | | ||||| Sbjct 628051 CCTGGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTCTCGTCGATCTT 628110 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACG 61610 ||| | ||||| || || | |||||||| ||||||||| ||| ||| |||| || || Sbjct 628111 CTGGGTCAAGAAGCGCGGCATGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCTCGCG 628170 Query 61611 CGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||||| |||| || || || |||| ||| | | || | | || Sbjct 628171 TGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTC---TCCCACCTCAAGCACCG 628227 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTC-GTGAGGCGGTAACTATCGAACAGGAAT 61729 || |||| ||| |||| | || || || || | ||||| ||||| | Sbjct 628228 CCCCAGCAAGGA-CGTCATCCAGAGAATCATCACCGATGCCGTGGCCATCGAGCAGGAGT 628286 Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | | || || ||| ||||| | | || | |||||||| || ||| ||||| Sbjct 628287 TCATCACCGAGGCTCTGCCCTGCGCCCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 628346 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATA 61849 | || || || || |||||||| ||| |||||| | | || | || | | || || Sbjct 628347 ACATCGAGTTCGTCGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGG 628406 Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 | | ||||| ||||| |||||||| | || ||||||| |||||||| || || |||| Sbjct 628407 CCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACTTCTTCG 628466 Query 61910 AGAAACGTGTAGGCGACTATCA 61931 |||| ||||| |||||||| || Sbjct 628467 AGAAGCGTGTTGGCGACTACCA 628488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567355567120