Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1052 724 0.0 seq800 426 7e-117 seq1289 109 2e-21 seq1696 87.8 7e-15 >seq1052 Length=38482 Score = 724 bits (802), Expect = 0.0 Identities = 570/670 (85%), Gaps = 17/670 (3%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 31854 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAAT 31913 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31914 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 31973 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| || Sbjct 31974 TGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTT 32033 Query 203 GCAACCAGAC--TTGCCCGCAGTTGCTCAACCGGCCC-CTCGGCCGGTGCACTCTTCTGC 259 || ||||||| || || | | | ||| |||| ||| |||||||||| || | Sbjct 32034 GCGACCAGACCTTTTCCTGGCG--GATCATCCGGTGTTCTCA-CCGGTGCACT--TCGCC 32088 Query 260 -GGTC-AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 |||| ||||||||||| | | | | ||||||| ||| |||| || || |||| Sbjct 32089 AGGTCGAGGCCAGCATCGGTTTTCGTAGGGGGATAAAAGCCTGAGGAACGTAGCTCCCTC 32148 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCC 375 ||| |||||||||||| | ||| | | |||| |||| |||||| || Sbjct 32149 --GGGAGTGTTATAGCCCCTCGCATAATACCTTTA-CGGGGACCGAGGACCGCGCCTTCG 32205 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 ||| ||||||||||| |||||||||| | || ||||||||| |||||||||||||||||| Sbjct 32206 GGCAAGGATGCTGGCATAATGGTTGTCAACGACCCGTCTTGAAACACGGACCAAGGAGTC 32265 Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495 ||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 32266 GAACATTTGTGCGAGTGTTTGGGTGTTAAACCCTCACGCGTAATGAAAGTGAACGGAGGT 32325 Query 496 GGGAACCCGTGA--GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 553 | || ||| | ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 32326 GAGAGCCCCTTGCGGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 32385 Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||| Sbjct 32386 AGAGCATAACTGTTCGGACCCGAAAGATGGTGAACTATGCGTGGATAGGGTGAAGCCAGA 32445 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | Sbjct 32446 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATCTGCGC 32505 Query 674 ATAGGGGCGA 683 || ||||||| Sbjct 32506 ATGGGGGCGA 32515 >seq800 Length=2272 Score = 426 bits (472), Expect = 7e-117 Identities = 368/447 (82%), Gaps = 13/447 (3%) Strand=Plus/Plus Query 243 CCGGTGCACTCTTCTGC-GGTC-AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCC 300 |||||||||| || | |||| ||||||||||| | | | | ||||||| ||| Sbjct 16 CCGGTGCACT--TCGCCAGGTCGAGGCCAGCATCGGTTTTCGTAGGGGGATAAAAGCCTG 73 Query 301 GGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGAC 360 |||| || || |||| ||| |||||||||||| | ||| | | |||| Sbjct 74 AGGAACGTAGCTCCCTC--GGGAGTGTTATAGCCCCTCGCATAATACCTTTA-CGGGGAC 130 Query 361 TGAGGTCCGCGC--TCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGA 418 |||| |||||| || ||| ||||||||||| |||||||||| | || ||||||||| | Sbjct 131 CGAGGACCGCGCCTTCGGGCAAGGATGCTGGCATAATGGTTGTCAACGACCCGTCTTGAA 190 Query 419 ACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAA 478 ||||||||||||||||| ||||| | ||||||||||||||||| |||||| ||||||| Sbjct 191 ACACGGACCAAGGAGTCGAACATTTGTGCGAGTGTTTGGGTGTTAAACCCTCACGCGTAA 250 Query 479 TGAAAGTGAACGGAGGTGGGAAC--CCGTGAGGGTGCACCATCGACCGATCCTGATGTCT 536 |||||||||||||||||| || | | ||| || | ||||||||||||||||||||| Sbjct 251 TGAAAGTGAACGGAGGTGAGAGCTGCGGTGCGGNG--ATCATCGACCGATCCTGATGTCT 308 Query 537 TCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTG 596 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || Sbjct 309 TCGGATGGATTTGAGTAAGAGCATAACTGTTCGGACCCGAAAGATGGTGAACTATGCGTG 368 Query 597 AATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATC 656 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 369 GATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATC 428 Query 657 GATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || | || ||||||| Sbjct 429 GATCGTCAAATCTGCGCATGGGGGCGA 455 >seq1289 Length=27655 Score = 109 bits (120), Expect = 2e-21 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 517 ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576 ||| ||||||| | || ||||||||| ||||||||||||| |||| ||||| |||| | Sbjct 3043 ATCAACCGATCTTAATATCTTCGGATAGATTTGAGTAAGAACATAACTGTTCGGACTTAA 2984 Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 ||||| | |||||| | |||| || || | | | |||||||||| | ||| ||| Sbjct 2983 AAGATAATAAACTATATATAAATAAAGTAAAACTAAAAAAAACTCTGGTAAAAGCTTGCA 2924 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||| ||| |||||| || | |||| | |||||||| Sbjct 2923 GCGGTTCTAACGTACAAATCAATTATTAAATCTATACATAGGGGC 2879 Score = 93.3 bits (102), Expect = 2e-16 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 67 TAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAG 126 ||||| |||||||||||| || |||||||||||||| || | | |||||||| | || Sbjct 3495 TAAATAGGAGGTAAATTTTTTTTAAAGCTAAATATTAGCTAAAAACCGATAGTATATAAA 3436 Query 127 TAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCAC-GTGAAATTG 185 || ||| || ||| || ||||| ||||| ||| | |||||| ||||| || ||||| Sbjct 3435 TAAAGTAATTAAAAAATAAAAAGTACTTTAAAAAAAAGGTTAAATAGCACAGTAAAATTA 3376 Query 186 TTGAAA 191 || ||| Sbjct 3375 TTAAAA 3370 >seq1696 Length=16007 Score = 87.8 bits (96), Expect = 7e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 492 AGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAG 551 ||||| || ||| || ||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 11899 AGGTGAGAGCCCTTGCGGGTGCATCATCCACCGATCCTGATGTCTTCGGATGGATTTGAG 11958 Query 552 TAA 554 ||| Sbjct 11959 TAA 11961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079962269450