Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1052 322 8e-86 seq1192 80.6 4e-13 seq1289 73.4 6e-11 >seq1052 Length=38482 Score = 322 bits (356), Expect = 8e-86 Identities = 229/259 (88%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 30744 TACTCGCTGTCTCTGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 30685 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||| || |||||||| ||| |||| |||||||||||||||||||||| Sbjct 30684 ACCTGTTATTGCATCCAACTTCCACCCGCTT-AAGCGGATAGTCCCTCTAAGAAGCCAGC 30626 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||| || |||||||||||||||| |||| Sbjct 30625 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTAAATGTCTCGTTCGTTATCGCAATT 30567 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 30566 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 30507 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 30506 AAAGAGCTCTCAATCTGTC 30488 >seq1192 Length=82949 Score = 80.6 bits (88), Expect = 4e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 59 |||||| || ||| ||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 28623 TACTCGCTGTCTCTGTCAGTGTAACGCGCATGCGGCCCGGAACATCTAAGGGCATCACA 28681 >seq1289 Length=27655 Score = 73.4 bits (80), Expect = 6e-11 Identities = 156/229 (68%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG 87 ||||||||||||||| || ||| | || | |||| ||||||| || || ||| ||| Sbjct 4681 GCGTGCGGCCCAGAATATTTAAAAGTATTATAGACTTGTTATTATATCTAATTTCTATTT 4740 Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATG-GGGCTATT 146 | ||| |||||| | ||| |||| ||| | | | || | || |||||||| Sbjct 4741 ATTT-AAGTAGATAGTCTTTTTAAAAAGCTAGCGTACTATTAAAG-CAATACGGGCTATT 4798 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||| || || | | ||| ||||| |||||| | | |||| | | || |||||| Sbjct 4799 TAGCAAGTAAATATTTTGTTTGTTATTATAATTAAGTAAATAAATTATTTTACTAACTAA 4858 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || || ||| || | ||| ||| ||| || ||| || | | ||||| Sbjct 4859 AAATAGCTATGTACTATTACCTATAAAATTAAAAAAAAGTTTTTAATCT 4907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786422279