Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1052 279 5e-73 seq1217 269 3e-70 seq1289 98.7 1e-18 seq1444 96.9 4e-18 >seq1052 Length=38482 Score = 279 bits (308), Expect = 5e-73 Identities = 177/191 (93%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||| Sbjct 29988 GGAACCAGGACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGGATA 30047 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 30048 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 30106 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 30107 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 30166 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 30167 TTGGATTTATT 30177 >seq1217 Length=30757 Score = 269 bits (298), Expect = 3e-70 Identities = 176/191 (92%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||| ||| Sbjct 286 GGAACCAGGACTTT-ACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGGATA 228 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 227 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 169 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 168 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 109 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 108 TTGGATTTATT 98 >seq1289 Length=27655 Score = 98.7 bits (108), Expect = 1e-18 Identities = 136/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 3 AACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACA 62 ||| || ||||||||| | ||||||||| || || ||||||||||| | || ||| | Sbjct 5408 AACTAGAACTTTTACTATAAAAAAATTAAAGTATTTAAAGCAGGCCTATACTTAGATATA 5349 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 ||| || ||||||| |||| || | |||||||||| | |||| |||||| | | Sbjct 5348 TTAGTATAAAATAATAAAATAAGATATATAGTTCTATTTTATTAGTTTTTAGGACTG-CT 5290 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||| || |||| ||||| | | | | |||| |||| | ||| || ||||| || Sbjct 5289 ATAATAATTAATAGGGATAATTAAAAGCATTAATATTTAATTATTAAAAGTAAAATTTTT 5230 Query 183 GGATTTATT 191 |||||||| Sbjct 5229 AGATTTATT 5221 >seq1444 Length=22337 Score = 96.9 bits (106), Expect = 4e-18 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61 |||| || |||||| | | ||||||||| | || |||||| || | |||| |||| Sbjct 2079 GAACTAGAGCTTTTATTATAAAAAAATTAAAATATTTAAAGCAAGCTTATGCTTAAATAT 2138 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 |||| || |||||||||||||||||| |||| || ||||| |||| || || | | Sbjct 2139 ATTAGTATAAAATAATAGAATAGGACGTATGGTTTTAGTTTGTTAGTTTTTAAAACTG-C 2197 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 ||||||| |||| | ||||| | | | |||| |||| | ||| | ||||| | Sbjct 2198 TATAATGATTAATAAGAATAGTTAAAAGCATTAATATTTAATTATTAAAAATAAAATTTT 2257 Query 182 TGGATTTATT 191 | |||||||| Sbjct 2258 TAGATTTATT 2267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511991275360