Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1052 370 2e-100 seq1192 167 4e-39 seq1318 95.1 2e-17 >seq1052 Length=38482 Score = 370 bits (410), Expect = 2e-100 Identities = 268/309 (87%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||| || ||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 30579 GAACGAGACATTTACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 30638 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||| ||| |||| | |||||||| || |||||||||||||||||||||||||| Sbjct 30639 AGGGACTATCCGCTTAAGCGGGTGGAAGTTGGATGCAATAACAGGTCTGTGATGCCCTTA 30698 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||| ||||||||||||| || ||||| | | |||| | | Sbjct 30699 GATGTTCTGGGCCGCACGCGCGTTACACTGACAGAGACAGCGAGTACTT--CCTTAGTAG 30756 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30757 AGATACTTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 30816 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||| Sbjct 30817 CTCTTCAACGAGGAATTCCTAGTAAGCGTAAGTCATCAACTTGCGTTGATTACGTCCCTG 30876 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 30877 CCCTTTGTA 30885 >seq1192 Length=82949 Score = 167 bits (184), Expect = 4e-39 Identities = 134/161 (83%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 |||||||||||||||||||| |||||||| ||||| ||||||||||||| || ||||| Sbjct 28681 TGTGATGCCCTTAGATGTTCCGGGCCGCATGCGCGTTACACTGACAGAGACAGCGAGTAA 28622 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 || ||| | | | | |||||||||||||||||||||||||||||||||||||| Sbjct 28621 TTC--CTTAGTAGAGATACTTTGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 28564 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 ||||||| ||| || |||||||||||| |||||||| || Sbjct 28563 ATTGCAACTATCACTTGTCAACGAGGAATTCCTAGTAAACG 28523 >seq1318 Length=26620 Score = 95.1 bits (104), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 12/204 (6%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || |||||| ||| ||| | | ||||||||||| | || |||||||| |||||| | Sbjct 11849 CTATGATGCATTTAAATGCTTTAGGCCGCACGCGTGTTATGTTGACAGAGACAACGAATA 11790 Query 186 CATCACCTTGGCCGGAAGGTCTGG-GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || || || || ||||||||| |||||| | | ||||| |||||||| Sbjct 11789 CTTCT--TT-------AGTACTTACGTAATCTTGCTAAACTTTATTGTGCTCGGGATAGA 11739 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 ||||||||||||||||| || | | | ||| |||||||| || |||| | ||| Sbjct 11738 GCATTGCAATTATTGCTTTTAATCTA-TAATTTTTAGTAAGCATAAGTTATCAACTTGCG 11680 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||||| | ||||| | |||||| Sbjct 11679 TTGATTGTGCCCCTG-CTTTTGTA 11657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947183338752