Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1052 747 0.0 seq1217 251 2e-64 seq477 239 1e-60 seq1289 237 5e-60 seq1444 132 1e-28 >seq1052 Length=38482 Score = 747 bits (828), Expect = 0.0 Identities = 469/504 (93%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29774 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 29715 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 29714 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 29655 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | |||||||||||||| ||||||| | Sbjct 29654 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGAAACCATGGCA 29595 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29594 GGCCAAGACCCTGCCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCG 29535 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||| ||||||| | ||||||||||||| ||| | Sbjct 29534 CAAGGCCATGCGATTCGAGAAGTTATTATAAATCACCCACAAGCCCCGAAGGGCATTGAT 29475 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct 29474 TTTTAATCTAATAAATACATCCCTTCGTAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 29415 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||| Sbjct 29414 AATTACCACGGTTATCCAAGTAATAAAGTACTATCAAATAAACAATAACTGATTTAATGA 29355 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 29354 GCCATTCGCAGTTTCGCCGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 29296 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 29295 AGACAAGCATATGACTACTGGCAG 29272 >seq1217 Length=30757 Score = 251 bits (278), Expect = 2e-64 Identities = 147/152 (97%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 499 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 558 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 559 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 618 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAA 152 ||||||||||| ||||||| |||| |||||| Sbjct 619 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAA 650 >seq477 Length=59477 Score = 239 bits (264), Expect = 1e-60 Identities = 144/152 (95%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 159 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTCATTGCCACTACCT 100 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 99 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 40 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAA 152 ||||||||||| ||||||| |||| || ||| Sbjct 39 TCTCAGGCTCCTTCTCCGGGGTCGAGCCATAA 8 >seq1289 Length=27655 Score = 237 bits (262), Expect = 5e-60 Identities = 349/493 (71%), Gaps = 1/493 (0%) Strand=Plus/Plus Query 12 AATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGG 71 ||||| |||||| |||| ||| || ||| | |||||||| | | || || | ||| | Sbjct 5635 AATTATAAGACCTAAAAAAGCTCTATATTAATATTTATTATTATTATCTTTCTATGTTAG 5694 Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 |||| |||||| |||||||| ||| || || | |||| |||| | | ||||| Sbjct 5695 GATTAAATAATTTATATGCCTGCTGTTTTCTTTAAATATAATAGCTGTTTTTTAAGCTCC 5754 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 ||| || | | |||||| | |||| || | || || | |||| | | | Sbjct 5755 TTCTTTAGAGTTAAGCCCTAACTTTTTATTACTTATTAAAACTATAGCAGGCTAAGACCT 5814 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251 | | || |||||| ||| |||| |||||| ||| ||| || | || || || || Sbjct 5815 TGCTATTAAAAGTTAATAAGGCAAAAATTTAAATAAACTATTACTAGCGTAAAGCTATAT 5874 Query 252 GATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAA 311 ||| || ||||||| ||| | | ||||||||| || ||| ||||| |||||| Sbjct 5875 AATTTAAAAAATTATTATAAATTATTTATAAGCCCCGAAAAGCATTGATTTTTAATCTAA 5934 Query 312 TAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 |||||| | | ||| || | ||| ||||||| || |||||| ||||||||||| | | Sbjct 5935 TAAATATATCTCTTTATAAATTGGGATTTTTAGTATATATTAGTTCTAGAATTACTATAG 5994 Query 372 TTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 |||| | ||| ||| ||| ||| ||||||| |||||| ||||||| ||||||| | || Sbjct 5995 TTATTTAAGTAATAAAGTATTATTAAATAAATAATAACTAATTTAATAAGCCATTTGTAG 6054 Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 ||| || |||| |||| ||||| ||||| || || ||||||| ||| | | ||| ||| Sbjct 6055 TTTTGCTATATA-ATTGTTTATATTTAGATATATATAGCTTAATTTTTAAAATAAGTATA 6113 Query 492 TGACTACTGGCAG 504 ||||||||||||| Sbjct 6114 TGACTACTGGCAG 6126 >seq1444 Length=22337 Score = 132 bits (146), Expect = 1e-28 Identities = 330/505 (65%), Gaps = 41/505 (8%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| ||| ||||| || || |||| ||| | ||| |||||||||| | | || || Sbjct 1866 TACTTATTTTAATTATAAAACTTAAAAAAGCTTTATATTAGTATTTATTATTATTATTTC 1807 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTG--GATGTGGTAGCCGT 119 || | | ||||| ||||||||| ||||||||||| || || ||| | |||| || Sbjct 1806 CCTATATTAGGATTAGGTAATTTGTGCGCCTGCTGCTTTTTTTTTAGATATAATAGCTGT 1747 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || | | |||| | ||| | | | |||||| | | |||| || | || || | Sbjct 1746 TTTTTAAGCTCTTTTTCCAGGGTTAAGCCCTAACTTTCTATTACTTATTAAAACTATAGC 1687 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | | | || |||||| ||| ||||||||||| ||||||| || || || Sbjct 1686 AGGCTAAGACCTTGTTATTAAAAGTTAATATGGCAGAAATTTAAATGAACTATTGCTAGC 1627 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 || || || ||| || ||||||| ||| | | || Sbjct 1626 ATAAAGCTATATAATTTAAAAAATTATTATAAATTATTTATAAG---------------- 1583 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||| ||| ||||| || | |||||| || ||||||||||| Sbjct 1582 ---TTT---TAAAAAATA------TT----------GATTTTTAATATATATTAGCTCTA 1545 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||| | |||||||| || ||| ||||||| ||||||| |||| | ||||||| Sbjct 1544 GAATTACTATAGTTATCCAAATAATAAAGTACTATTAAATAAATAATAATTAATTTAATA 1485 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||| ||| ||||| | |||| |||| ||||| ||||| || || ||||| ||| Sbjct 1484 AGCTATTTATAGTTTTGTTATATA-ATTGTTTATATTTAGATATATATAATTTAATTTTT 1426 Query 480 GAGACAAGCATATGACTACTGGCAG 504 | |||| ||||| | ||| ||||| Sbjct 1425 AAAACAAACATATAATTACGGGCAG 1401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510373432064