Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1336 232 5e-56 seq1008 150 1e-31 >seq1336 Length=25880 Score = 232 bits (256), Expect = 5e-56 Identities = 627/949 (66%), Gaps = 8/949 (1%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 ||||| | |||||| ||||| | || || ||||| | ||||| | || || ||||| Sbjct 5103 GATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAG 5162 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG-CATGCATC 66132 |||||| | || || || |||| |||| || || |||||||||||| | || || Sbjct 5163 AGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGG-TC 5221 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||||| | |||| | || | || ||||| || | ||| | ||||| | ||| || Sbjct 5222 CTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGAG 5281 Query 66193 AGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGT 66251 | || || | ||| | | ||| | ||| | ||| || | ||||||||| Sbjct 5282 CTTCTGGGCTTTTATCGTCTGG-CGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGG 5340 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311 ||| || ||||| | || |||| |||| | ||||| || || |||||||| | Sbjct 5341 CTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTG 5400 Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 ||| || | || || || || ||| || |||||||| ||||| ||||| || Sbjct 5401 TCCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGA 5460 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431 |||| || || || || ||||| | ||||| || || |||| || |||||||||| Sbjct 5461 AGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAA 5520 Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491 | | || | ||||| ||||| ||||| || || || | |||| ||||| |||| Sbjct 5521 ATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCAC 5580 Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAG 66551 |||| ||||||||||| ||| ||||||||||| || ||||| || |||| || || | Sbjct 5581 CTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCG 5640 Query 66552 ATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGA 66610 | |||||||||| ||| | ||| || || ||| || || ||| || |||||||| Sbjct 5641 ACGTGCCATTGGTACCGGCAATGTAAGAGCC-CGTGGCACGGATACGATGTACATTCAGG 5699 Query 66611 CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCG 66670 ||||| || || ||| |||| || || |||||| | || | ||||| Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCC 5759 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 ||||| ||| | || ||| | | | |||| ||| | || || | || || Sbjct 5760 TCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTT 5819 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 | || ||| || || || | ||| || || ||||| | | | |||||| ||||| Sbjct 5820 CCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAG 5879 Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAG 66849 ||||||| ||| |||| | || || ||| || | | |||| ||||| | | Sbjct 5880 GTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACA-CGCATGATCAT 5938 Query 66850 GTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGT 66909 || ||||| | ||||| | | | ||||| | || | || || || ||||| || Sbjct 5939 GTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGT 5998 Query 66910 CTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGCC 66958 ||||| || ||||| ||| ||||| ||| ||| || |||||| Sbjct 5999 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCC 6047 >seq1008 Length=41606 Score = 150 bits (166), Expect = 1e-31 Identities = 235/333 (71%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || || || ||||||||||| | |||||| ||||| || Sbjct 1507 ATCTGGCAAATGTACAAGAAAGCCGAGGCATCCTTCTGGACTGCAGAGGAGATCGATCTG 1566 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | || | | ||| | || || | |||||| Sbjct 1567 TCCAAGGACCTCCACGACTGGAACAACCGAATCAACGAA-GACGAGAAATACTTCATTTC 1625 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | ||||| ||||||||||| ||||||||||||||||| |||||| | | || || Sbjct 1626 CCACATCTTGGCCTTCTTTGCCGCCTCGGACGGTATCGTCAACGAGAATCTTGTTGAGCG 1685 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||||| || | | || || || || |||||||| |||||||| || Sbjct 1686 TTTCAGTGGCGAGGTTCAGATTCCCGAAGCTCGATGCTTCTACGGTTTCCAGATCATGAT 1745 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| ||| | | ||||| || || || || | ||||| || Sbjct 1746 GGAGAACATCCACTCCGAGACATACTCTCTGCTCATTGACACCTATATTAAGGAGCCCGC 1805 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415 | || | |||||||||||||||| || Sbjct 1806 TCAGCGCACTCACCTGTTCAATGCCATCGACAC 1838 Score = 105 bits (116), Expect = 5e-18 Identities = 294/447 (66%), Gaps = 7/447 (2%) Strand=Plus/Plus Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546 |||| || | || || || | || || ||| | || ||||| || | || ||| | | Sbjct 1965 AACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTA 2024 Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606 |||| ||| | ||||| ||||| || |||||||| ||||||||| || ||| | || | Sbjct 2025 TCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCT 2084 Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTG 61665 | || ||||| || | || || ||||| ||| ||||| | | || | Sbjct 2085 CGCGTGACGAAGGTCTCCACACCGACTTTGCCTGT----CTATTGTTTTCCCACTTGAAG 2140 Query 61666 AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACA 61724 || || || | || || | | || | ||| || || || | ||||| || Sbjct 2141 AACCGGCCCAGCAAAGAAGTCGTAGAAGCAGTTAT-CGTCGATGCCGTGAGGATCGAGCA 2199 Query 61725 GGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTC 61784 ||||| ||||| || ||| | || | || |||| |||||| || ||| Sbjct 2200 AGAATTCCTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAATGCAAACCTCATGAA 2259 Query 61785 GCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTA 61844 |||||| ||||| || || ||||| |||||| | |||| |||||| | || | |||| Sbjct 2260 GCAGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTTGGGCAATGAGAAGGTCTA 2319 Query 61845 TAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTT 61904 | | ||||| || ||||||||||| | |||||||| | ||||||||| || || Sbjct 2320 CCGCTCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTT 2379 Query 61905 TTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || || || || || || || Sbjct 2380 CTTCGAAAAGCGCGTCGGTGATTACCA 2406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559477011760