Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 232 5e-56
seq1008 150 1e-31
>seq1336
Length=25880
Score = 232 bits (256), Expect = 5e-56
Identities = 627/949 (66%), Gaps = 8/949 (1%)
Strand=Plus/Plus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
||||| | |||||| ||||| | || || ||||| | ||||| | || || |||||
Sbjct 5103 GATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAG 5162
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG-CATGCATC 66132
|||||| | || || || |||| |||| || || |||||||||||| | || ||
Sbjct 5163 AGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGG-TC 5221
Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192
|||||| | |||| | || | || ||||| || | ||| | ||||| | ||| ||
Sbjct 5222 CTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGAG 5281
Query 66193 AGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGT 66251
| || || | ||| | | ||| | ||| | ||| || | |||||||||
Sbjct 5282 CTTCTGGGCTTTTATCGTCTGG-CGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGG 5340
Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311
||| || ||||| | || |||| |||| | ||||| || || |||||||| |
Sbjct 5341 CTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTG 5400
Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371
||| || | || || || || ||| || |||||||| ||||| ||||| ||
Sbjct 5401 TCCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGA 5460
Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431
|||| || || || || ||||| | ||||| || || |||| || ||||||||||
Sbjct 5461 AGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAA 5520
Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491
| | || | ||||| ||||| ||||| || || || | |||| ||||| ||||
Sbjct 5521 ATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCAC 5580
Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAG 66551
|||| ||||||||||| ||| ||||||||||| || ||||| || |||| || || |
Sbjct 5581 CTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCG 5640
Query 66552 ATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGA 66610
| |||||||||| ||| | ||| || || ||| || || ||| || ||||||||
Sbjct 5641 ACGTGCCATTGGTACCGGCAATGTAAGAGCC-CGTGGCACGGATACGATGTACATTCAGG 5699
Query 66611 CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCG 66670
||||| || || ||| |||| || || |||||| | || | |||||
Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCC 5759
Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730
||||| ||| | || ||| | | | |||| ||| | || || | || ||
Sbjct 5760 TCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTT 5819
Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790
| || ||| || || || | ||| || || ||||| | | | |||||| |||||
Sbjct 5820 CCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAG 5879
Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGGAG 66849
||||||| ||| |||| | || || ||| || | | |||| ||||| | |
Sbjct 5880 GTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACA-CGCATGATCAT 5938
Query 66850 GTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGT 66909
|| ||||| | ||||| | | | ||||| | || | || || || ||||| ||
Sbjct 5939 GTGCTGAGGTCTCTCGACAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGT 5998
Query 66910 CTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGCC 66958
||||| || ||||| ||| ||||| ||| ||| || ||||||
Sbjct 5999 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCC 6047
>seq1008
Length=41606
Score = 150 bits (166), Expect = 1e-31
Identities = 235/333 (71%), Gaps = 5/333 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| || || || || ||||||||||| | |||||| ||||| ||
Sbjct 1507 ATCTGGCAAATGTACAAGAAAGCCGAGGCATCCTTCTGGACTGCAGAGGAGATCGATCTG 1566
Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202
||||| ||| | | |||||| | || | | ||| | || || | ||||||
Sbjct 1567 TCCAAGGACCTCCACGACTGGAACAACCGAATCAACGAA-GACGAGAAATACTTCATTTC 1625
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | ||||| ||||||||||| ||||||||||||||||| |||||| | | || ||
Sbjct 1626 CCACATCTTGGCCTTCTTTGCCGCCTCGGACGGTATCGTCAACGAGAATCTTGTTGAGCG 1685
Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
|||| ||||| || | | || || || || |||||||| |||||||| ||
Sbjct 1686 TTTCAGTGGCGAGGTTCAGATTCCCGAAGCTCGATGCTTCTACGGTTTCCAGATCATGAT 1745
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382
|||||| ||||||| |||| ||| | | ||||| || || || || | ||||| ||
Sbjct 1746 GGAGAACATCCACTCCGAGACATACTCTCTGCTCATTGACACCTATATTAAGGAGCCCGC 1805
Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGAC 61415
| || | |||||||||||||||| ||
Sbjct 1806 TCAGCGCACTCACCTGTTCAATGCCATCGACAC 1838
Score = 105 bits (116), Expect = 5e-18
Identities = 294/447 (66%), Gaps = 7/447 (2%)
Strand=Plus/Plus
Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546
|||| || | || || || | || || ||| | || ||||| || | || ||| | |
Sbjct 1965 AACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTA 2024
Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606
|||| ||| | ||||| ||||| || |||||||| ||||||||| || ||| | || |
Sbjct 2025 TCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCT 2084
Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTG 61665
| || ||||| || | || || ||||| ||| ||||| | | || |
Sbjct 2085 CGCGTGACGAAGGTCTCCACACCGACTTTGCCTGT----CTATTGTTTTCCCACTTGAAG 2140
Query 61666 AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACA 61724
|| || || | || || | | || | ||| || || || | ||||| ||
Sbjct 2141 AACCGGCCCAGCAAAGAAGTCGTAGAAGCAGTTAT-CGTCGATGCCGTGAGGATCGAGCA 2199
Query 61725 GGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTC 61784
||||| ||||| || ||| | || | || |||| |||||| || |||
Sbjct 2200 AGAATTCCTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAATGCAAACCTCATGAA 2259
Query 61785 GCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTA 61844
|||||| ||||| || || ||||| |||||| | |||| |||||| | || | ||||
Sbjct 2260 GCAGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTCGCTTTGGGCAATGAGAAGGTCTA 2319
Query 61845 TAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTT 61904
| | ||||| || ||||||||||| | |||||||| | ||||||||| || ||
Sbjct 2320 CCGCTCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTT 2379
Query 61905 TTTCGAGAAACGTGTAGGCGACTATCA 61931
||||| || || || || || || ||
Sbjct 2380 CTTCGAAAAGCGCGTCGGTGATTACCA 2406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397559477011760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |