Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 219 3e-52 seq6 123 2e-23 >seq4 Length=4775223 Score = 219 bits (242), Expect = 3e-52 Identities = 441/651 (68%), Gaps = 10/651 (2%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||| || | ||||| || || || || | ||||||||| || | || || || || | Sbjct 4664367 CCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACTTCATCGGGGGCAG 4664308 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | |||||||| || ||| ||| || ||| || ||| |||||||| | ||||| || | Sbjct 4664307 TGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGT 4664248 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||||| ||||| |||||||||| |||| | || |||| ||||| ||||| | Sbjct 4664247 TGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAG 4664188 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGT--ACCGCCCTACC 66225 ||| | || |||| ||| || | ||| || || || || ||||| || Sbjct 4664187 CCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGGACAGTCTCGCGGCCACGGCCCT-CC 4664129 Query 66226 TTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA 66285 || ||||| || |||||||| ||||| || || | || || | ||||| Sbjct 4664128 TTC----TCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATACACGTCTGCCAGACC 4664073 Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 || || | || || ||||| || | |||| || | ||| || ||||| ||| || Sbjct 4664072 CGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAA 4664013 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 || || || |||||||| |||||||| || || || || || ||||| | ||||| Sbjct 4664012 CAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTG 4663953 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || ||||| | ||||||||| || | ||||| ||||| || || ||||||||||| Sbjct 4663952 GTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGATGGC 4663893 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 || | |||| || ||| || || ||||| |||||||| || |||||| |||| Sbjct 4663892 AAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGAC 4663833 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 || | ||| || | || || || |||| ||||| ||| | ||| | || Sbjct 4663832 GCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGGTACCGGCAATGTAGCTGCCGGT 4663773 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 || || || ||| || || ||||| || || || || ||||| ||||| Sbjct 4663772 GGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCAGCGGTCTTAGAGAT 4663722 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 9148 TGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATA 9207 ||||||| | || || |||||||||||||| ||||| || ||| | ||| | | Sbjct 1682417 TGGGCCCGGTATATGGCTTCCAGTGGCGACACTTCGGAGCAGAGTATGTGGATGCGAAGA 1682358 Query 9208 CGGACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGT-ATGCATCAGATCCAATAT 9266 | |||||||||||||||||||| || |||||||| | |||| || | || | | | Sbjct 1682357 CAGACTATACGGGCCAAGGTGTTGACCAGTTGGC-CGATGTCATCGACAAGCTGAAGAAC 1682299 Query 9267 GAGCCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATG 9326 ||||| | || ||||| || |||| || ||||||||| || || | |||||| Sbjct 1682298 AAGCCGTATGACCGCCGCATCATCATGAGCGCATGGAATCCGGCAGACCTGAAGAAGATG 1682239 Query 9327 GTATTGCCGCCATGCCATATG 9347 | |||| || ||||| ||| Sbjct 1682238 GCCCTGCCCCCTTGCCACATG 1682218 >seq6 Length=2952248 Score = 123 bits (136), Expect = 2e-23 Identities = 209/297 (70%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || ||||| |||||||| | |||||| | || | Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876 Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| | |||| | | ||| || ||| | ||||| Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGA-CGATGAGCGCTTCTTCATCTC 1057817 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| ||||| ||||| || ||||| || ||||| | | || || Sbjct 1057816 GCACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCG 1057757 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | | |||| || | | ||||| || || ||||||||||||||||| | Sbjct 1057756 CTTCAGCTCCG-AGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 1057698 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| | ||||| |||| ||| | || ||||| ||||||||||| |||| Sbjct 1057697 TGGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCAGCGAGC 1057641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567859484560