Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4 219 3e-52
seq6 123 2e-23
>seq4
Length=4775223
Score = 219 bits (242), Expect = 3e-52
Identities = 441/651 (68%), Gaps = 10/651 (2%)
Strand=Plus/Minus
Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050
|||| || | ||||| || || || || | ||||||||| || | || || || || |
Sbjct 4664367 CCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACTTCATCGGGGGCAG 4664308
Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110
| |||||||| || ||| ||| || ||| || ||| |||||||| | ||||| || |
Sbjct 4664307 TGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGT 4664248
Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170
| |||||||| ||||| |||||||||| |||| | || |||| ||||| ||||| |
Sbjct 4664247 TGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAG 4664188
Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGT--ACCGCCCTACC 66225
||| | || |||| ||| || | ||| || || || || ||||| ||
Sbjct 4664187 CCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGGACAGTCTCGCGGCCACGGCCCT-CC 4664129
Query 66226 TTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA 66285
|| ||||| || |||||||| ||||| || || | || || | |||||
Sbjct 4664128 TTC----TCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATACACGTCTGCCAGACC 4664073
Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345
|| || | || || ||||| || | |||| || | ||| || ||||| ||| ||
Sbjct 4664072 CGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAA 4664013
Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405
|| || || |||||||| |||||||| || || || || || ||||| | |||||
Sbjct 4664012 CAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTG 4663953
Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465
|| ||||| | ||||||||| || | ||||| ||||| || || |||||||||||
Sbjct 4663952 GTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGATGGC 4663893
Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525
|| | |||| || ||| || || ||||| |||||||| || |||||| ||||
Sbjct 4663892 AAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGAC 4663833
Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585
|| | ||| || | || || || |||| ||||| ||| | ||| | ||
Sbjct 4663832 GCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGGTACCGGCAATGTAGCTGCCGGT 4663773
Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
|| || || ||| || || ||||| || || || || ||||| |||||
Sbjct 4663772 GGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCAGCGGTCTTAGAGAT 4663722
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 9148 TGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATA 9207
||||||| | || || |||||||||||||| ||||| || ||| | ||| | |
Sbjct 1682417 TGGGCCCGGTATATGGCTTCCAGTGGCGACACTTCGGAGCAGAGTATGTGGATGCGAAGA 1682358
Query 9208 CGGACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGT-ATGCATCAGATCCAATAT 9266
| |||||||||||||||||||| || |||||||| | |||| || | || | | |
Sbjct 1682357 CAGACTATACGGGCCAAGGTGTTGACCAGTTGGC-CGATGTCATCGACAAGCTGAAGAAC 1682299
Query 9267 GAGCCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATG 9326
||||| | || ||||| || |||| || ||||||||| || || | ||||||
Sbjct 1682298 AAGCCGTATGACCGCCGCATCATCATGAGCGCATGGAATCCGGCAGACCTGAAGAAGATG 1682239
Query 9327 GTATTGCCGCCATGCCATATG 9347
| |||| || ||||| |||
Sbjct 1682238 GCCCTGCCCCCTTGCCACATG 1682218
>seq6
Length=2952248
Score = 123 bits (136), Expect = 2e-23
Identities = 209/297 (70%), Gaps = 7/297 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || ||||| |||||||| | |||||| | || |
Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876
Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202
||||| ||| | | |||||| | |||| | | ||| || ||| | |||||
Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGA-CGATGAGCGCTTCTTCATCTC 1057817
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| || | || ||||| ||||| ||||| || ||||| || ||||| | | || ||
Sbjct 1057816 GCACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCG 1057757
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || | | |||| || | | ||||| || || ||||||||||||||||| |
Sbjct 1057756 CTTCAGCTCCG-AGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 1057698
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
||||||| | ||||| |||| ||| | || ||||| ||||||||||| ||||
Sbjct 1057697 TGGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCAGCGAGC 1057641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567859484560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |