Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq173 105 2e-20 seq169 105 2e-20 seq132 105 2e-20 >seq173 Length=2604 Score = 105 bits (116), Expect = 2e-20 Identities = 193/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 1706 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATTGAGACAGCTGTTGT 1647 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 1646 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 1587 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC-------TTCGCGTT 179 || | || | || ||||||| || | |||| || |||| | | || || Sbjct 1586 CCCTCATCGGTAAGGCCGCCATTGATTGGGGTATCCTTCAAAACCTAGTTTATTTTAGTC 1527 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 | |||| ||| |||||| || || ||||||| |||||| | |||| | | | Sbjct 1526 AACTAAGAAAATCCGTTAACCAGCCAACATCGGGCAGAAATCACACTCAATACTTTGATT 1467 Query 240 -TTCGT-GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| | |||||| |||||| |||||| | |||||||||| Sbjct 1466 ATTCATCTTTTGCAAAGTGCTTTGTTTTAATTAAACAGTCG 1426 >seq169 Length=2770 Score = 105 bits (116), Expect = 2e-20 Identities = 193/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 2436 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATTGAGACAGCTGTTGT 2377 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 2376 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 2317 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC-------TTCGCGTT 179 || | || | || ||||||| || | |||| || |||| | | || || Sbjct 2316 CCCTCATCGGTAAGGCCGCCATTGATTGGGGTATCCTTCAAAACCTAGTTTATTTTAGTC 2257 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 | |||| ||| |||||| || || ||||||| |||||| | |||| | | | Sbjct 2256 AACTAAGAAAATCCGTTAACCAGCCAACATCGGGCAGAAATCACACTCAATACTTTGATT 2197 Query 240 -TTCGT-GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| | |||||| |||||| |||||| | |||||||||| Sbjct 2196 ATTCATCTTTTGCAAAGTGCTTTGTTTTAATTAAACAGTCG 2156 >seq132 Length=5117 Score = 105 bits (116), Expect = 2e-20 Identities = 193/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 3145 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATTGAGACAGCTGTTGT 3204 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 3205 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 3264 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC-------TTCGCGTT 179 || | || | || ||||||| || | |||| || |||| | | || || Sbjct 3265 CCCTCATCGGTAAGGCCGCCATTGATTGGGGTATCCTTCAAAACCTAGTTTATTTTAGTC 3324 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 | |||| ||| |||||| || || ||||||| |||||| | |||| | | | Sbjct 3325 AACTAAGAAAATCCGTTAACCAGCCAACATCGGGCAGAAATCACACTCAATACTTTGATT 3384 Query 240 -TTCGT-GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| | |||||| |||||| |||||| | |||||||||| Sbjct 3385 ATTCATCTTTTGCAAAGTGCTTTGTTTTAATTAAACAGTCG 3425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260793557312