Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2602 578 2e-162 seq1206 423 8e-116 >seq2602 Length=3881 Score = 578 bits (640), Expect = 2e-162 Identities = 367/397 (92%), Gaps = 1/397 (0%) Strand=Plus/Plus Query 10 GGTGGCCT-AGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTA 68 ||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3485 GGTTGCCTTAGCCATGTGAATCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTA 3544 Query 69 AATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3545 AATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTA 3604 Query 129 GAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTG 188 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3605 GAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTG 3664 Query 189 AAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTG 248 ||||||||||||||||| ||||||||| |||||||||||||||||| | | | |||||| Sbjct 3665 AAAGGGAAGCGCTTGCAGCCAGACTTGTCCGCAGTTGCTCAACCGGTCTCCTGACCGGTG 3724 Query 249 CACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGT 308 |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 3725 TACTCTTCTGCGGCCAGGCCAGCATCAGTTCGGGCGGTCGGATAAAGGCCCTGGGAATGT 3784 Query 309 GGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCC 368 || || |||||| |||||||||||| ||||||||||||||| ||||||||||||| | Sbjct 3785 AGCTCCTCTCGGGGAGTGTTATAGCCCAGGGTGGAATGCGGCCAGCCTGGACTGAGGATC 3844 Query 369 GCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGC 405 |||| ||||||||||||||||||||||| ||||||| Sbjct 3845 TCGCTTCGGCTAGGATGCTGGCGTAATGGCTGTAAGC 3881 >seq1206 Length=514 Score = 423 bits (468), Expect = 8e-116 Identities = 383/476 (80%), Gaps = 12/476 (3%) Strand=Plus/Minus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||| ||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 483 AGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTT 424 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 423 CTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 364 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 363 AGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGAC 304 Query 208 CAGACTTG---CCCGCAGTTGCTCAACCGGCCCCTCGG-CCGGTGCACTCTTCTGCGGTC 263 |||||||| | ||||| | | |||| | ||| |||| | | | | Sbjct 303 CAGACTTGTCTCTATCAGTTTTGCTA----GTTTTCGGACTGGTTTACTC-TGTTAGTAC 249 Query 264 AGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGG 323 ||||||||||||| | | ||| |||||| ||||||||||| |||| ||| Sbjct 248 AGGCCAGCATCAGTTTGTTGTTAGGGAGAAAGGCTTAGGGAATGTGGCTCCCT--CGGGA 191 Query 324 GTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGA 383 |||||||||||| | ||| | || | |||||||| ||||||| |||| |||| Sbjct 190 GTGTTATAGCCCTTTGCATAATACCTTTCGGC-AGACTGAGGACCGCGCTTCGGCAAGGA 132 Query 384 TGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCT 443 ||||||||||||||| | |||| ||||||||| |||||||||||||||||| | | | | Sbjct 131 TGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACCTTAT 72 Query 444 ATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 ||||||||||||||||| |||||| |||||||||||| ||||||| ||||| || Sbjct 71 GTGCGAGTGTTTGGGTGTAAAACCCCAGCGCGTAATGAACGTGAACGTAGGTGAGA 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079884599000