Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3378 264 9e-66 seq3000 145 6e-30 seq1419 86.0 5e-12 >seq3378 Length=101758 Score = 264 bits (292), Expect = 9e-66 Identities = 446/643 (69%), Gaps = 12/643 (2%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| || || ||||| || | |||||| ||||| | || ||||||||||| ||||||| Sbjct 62807 TGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGA 62866 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 | |||||| |||||| || || || |||||||| | |||| || || ||||||| Sbjct 62867 CGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGC 62926 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||||| |||||||||| |||| | || | ||||| || || |||| ||| | || Sbjct 62927 GGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGA 62986 Query 66180 TGGCGTGCCAAAG------AGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTT 66233 | |||| ||| || ||| || | || | || || |||| |||| | Sbjct 62987 TCGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACC-ACGACCCT-CCTTC----T 63040 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 | || || ||||||||| ||||| ||||| | || |||| |||| || |||| Sbjct 63041 CATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACT 63100 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 || || ||||| || | ||| || | ||| || ||||| ||| || ||||| | Sbjct 63101 CGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGG 63160 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | |||||||| |||||||| || || || || || |||||| | ||||| || || | Sbjct 63161 GAATCCAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTAC 63220 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 | | |||||| || |||| || |||||||| || || |||||||||||||| | | Sbjct 63221 GGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCAC 63280 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 | || ||| ||||| ||||| |||||||| || |||||| | ||||| | || Sbjct 63281 CGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCA 63340 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTA 66593 | || | ||| ||||| |||| || || ||| | ||| | || || || | Sbjct 63341 TAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGA 63400 Query 66594 TATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | |||||| |||||||| ||||||||||| ||||| ||||| Sbjct 63401 TGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGAT 63443 Score = 118 bits (130), Expect = 8e-22 Identities = 323/486 (66%), Gaps = 14/486 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | | |||||| |||| ||| | || ||||||||||||||| Sbjct 61903 TCGACAGTGAACTGGATGGGAGCAGCAGCGGCCTGGGTGCGGAGGTAGTACATGCCGGTC 61962 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCTC 65196 ||||||||| |||| || ||| |||||||| | | || |||| | | || || Sbjct 61963 TTGAGGCCAAGCTTCCAACCAGCGAAGTGCATCGA-GGTGATCTTGCCCATCGTGGGGTC 62021 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCA 65255 || || ||||| | ||||| ||||||||| |||| |||||| || || |||| Sbjct 62022 CTTCATGTGGATATTGAGGGACTGCGATTGATCGATG-AACGCACCACGGTCGGCGGCCA 62080 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || ||| || || | |||||||||||||||||| | ||| | | | ||| Sbjct 62081 TCTGAACGATGGTGCGCTGGGAAAGCTCCCAGACGGTCTTGTAGA-GCGCCTTGATGTCA 62139 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||| || | || | ||| | || || ||||| ||||| || |||| Sbjct 62140 TCTGGGATGTTGGGGATCTGCTGAATAGAGCCGTTGGAGGCAATGATGCGGTTCTTCATC 62199 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGAC 65430 || ||||||| || | || | || | | || ||| | | |||| || Sbjct 62200 TGATCAGACCACAGTCCGAGGTCAACGAGGTCCTTCAGGAGCCACG----GGTTGACAAC 62255 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||||| || |||| || ||||| || |||||||| || || || || || | Sbjct 62256 CTGGAATTCACCGGCGAGGACACGGCGAGAGTAGATGTTTGAGGTATAAGGCTCGAAACA 62315 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 ||| || ||| ||||| ||| || || ||||| ||||| ||||| || | ||| || Sbjct 62316 CTCATTGAAGCCGAGAATCTGGCTGGTCGAGGCAGTGGGCATTGGAGCAACGAGCAAGGA 62375 Query 65551 GTTTCG 65556 ||| || Sbjct 62376 GTTGCG 62381 >seq3000 Length=185088 Score = 145 bits (160), Expect = 6e-30 Identities = 296/435 (68%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || || |||| ||||||||| | || ||||| || || || ||| | || || ||| | Sbjct 10295 GCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCATTTTCTGGCTC 10236 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || ||||| ||| |||| ||| ||||||| | || || ||||| ||| Sbjct 10235 AAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTCTCGCGATGAG 10176 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGT-GAATCGTCCGTC 61676 ||||||||| || || || |||| ||| | | ||| || ||| | || | Sbjct 10175 GGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCAC-ATCAAGTCGAAGC--CCAGC 10119 Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 | | | || | |||| | ||||| || ||||| |||| || || || Sbjct 10118 CCCGAATCCGTTGAGA-AGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCAC 10060 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 |||||| | |||||| | || | |||||||| || |||| ||||| || || Sbjct 10059 GGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCATGTGCCAGTACATCGA 10000 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 || ||||| ||||| ||| |||| | |||| | ||| | ||| || ||| || Sbjct 9999 GTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGTACTACAACTCGACCAA 9940 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||| || || |||||||| | || ||||| | ||||||||||| || |||||||| || Sbjct 9939 CCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCG 9880 Query 61917 TGTAGGCGACTATCA 61931 || || ||||| || Sbjct 9879 CGTTGGTGACTACCA 9865 >seq1419 Length=54520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 9150 GGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACG 9209 |||||| | ||||| ||||||||||| || ||||| ||| |||| | || ||| Sbjct 42373 GGCCCCGTCTACGGCTTCCAGTGGCGGCACTTCGGCGCTGAGTACGTGGACGCGACGACG 42432 Query 9210 GACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGT-ATGCATCAGATCCAATATGA 9268 ||||| | ||| ||||||||||||||| ||||| |||| || | || | | | | Sbjct 42433 GACTACAGGGGACAAGGTGTGGATCAGCTGGCG-GATGTGATCGACAAGCTTAAGAACAA 42491 Query 9269 GCCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGATGGT 9328 |||| ||| ||||| || |||| || ||||||||| || || | ||||||| Sbjct 42492 GCCGTACGATCGCCGCATCATCATGAGCGCGTGGAATCCGGCGGACCTGAAGAAGATGGC 42551 Query 9329 ATTGCCGCCATGCCATATG 9347 |||| || ||||| ||| Sbjct 42552 TCTGCCCCCTTGCCACATG 42570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550309590640