Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marssonina_20coronariae_20[genbank_20GCA_5F002204255.1_202017-06-21]
589 sequences; 50,267,101 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq419 504 1e-140
seq160 196 9e-48
>seq419
Length=2813
Score = 504 bits (558), Expect = 1e-140
Identities = 300/314 (96%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1229 TGGTCCGACCGGGTTTTTCCTTCTGGGGAGCCGCATGCCCTTCACTGGGTGTGTCGGGGA 1288
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1289 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGGATACAT 1348
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1349 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 1408
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1409 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 1468
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1469 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 1528
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 1529 ACGAAAGTTAGGGG 1542
>seq160
Length=500388
Score = 196 bits (216), Expect = 9e-48
Identities = 119/126 (94%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 136026 ATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTA 135967
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 135966 AAGACTAACTACTGCGAAAGCATTTGCCAAGGATATTTTCATTAATCAGTGAACGAAAGT 135907
Query 313 TAGGGG 318
||||||
Sbjct 135906 TAGGGG 135901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915194609472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |