Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marssonina_20coronariae_20[genbank_20GCA_5F002204255.1_202017-06-21]
589 sequences; 50,267,101 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq108 893 0.0
seq401 143 1e-31
>seq108
Length=1047
Score = 893 bits (990), Expect = 0.0
Identities = 598/665 (90%), Gaps = 1/665 (0%)
Strand=Plus/Plus
Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 102 CCGGGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTA 161
Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 162 TATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 221
Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 222 AGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCG 281
Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGC 259
||||| |||||||||| ||| | | ||| |||| | | |||| |||| | | ||
Sbjct 282 CTTGCCCCCAGACTTGCGCGCCGCCGATCACCCGGGCTTCTGCCCGGGGCACGCGGCGGC 341
Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319
| |||||||||||| | || || ||| ||| ||||||| ||||| || || ||| |||
Sbjct 342 GCGCAGGCCAGCATCGGTTCCGGTGGTGGGACAAAGGCCTTGGGAACGTAGCTCCCCTCG 401
Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379
||| |||||||||||| |||| ||||| ||| || |||| |||| |||||||||||||
Sbjct 402 GGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTCCGGCT 461
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
|||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||
Sbjct 462 AGGATGCTGGCGTAATGGGTGCAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 521
Query 440 ATCTATGCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498
||||||||||||||||||||||| |||||| | |||| |||||||||||||||||||| |
Sbjct 522 ATCTATGCGAGTGTTTGGGTGTCAAAACCCATCCGCGCAATGAAAGTGAACGGAGGTGAG 581
Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 582 AACCCGCGAGGGGGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGC 641
Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 642 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAA 701
Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 702 CTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGG 761
Query 679 GGCGA 683
|||||
Sbjct 762 GGCGA 766
>seq401
Length=57623
Score = 143 bits (158), Expect = 1e-31
Identities = 176/238 (74%), Gaps = 7/238 (3%)
Strand=Plus/Minus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
||||||| ||| ||||||| |||||||| |||||||| ||||||| | || | ||
Sbjct 7670 GAAGCTCGCTCGCCGAGTCGGATTGTTTGGCCGTGCAGCTC-AAATGGGTGTTATAACTC 7612
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|||| || ||| ||| ||| ||||||||||||||||| | ||||||| || | ||||
Sbjct 7611 TTCTGAAACTAGATACTGGGAAGAGACCGATAGCGCACGATCAGAGTGACTGAGAAATGA 7552
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCA 205
||||| | || |||||| ||| || | ||||| ||| | | |||||||||||||||
Sbjct 7551 AAAGCTC-----AACGAGAGTCAAACAGTAAGTGAAGTTGGTCACAGGGAAGCGCTTGCA 7497
Query 206 ACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTC 263
|| |||||| ||| | | || | ||| || || | |||||| |||||| ||
Sbjct 7496 GCCGGACTTGTGCGCTGATAGCCATCAGGCTTCT-ATCCAGCGCACTCGTCTGCGCTC 7440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079987365950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |