Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marssonina_20coronariae_20[genbank_20GCA_5F002204255.1_202017-06-21] 589 sequences; 50,267,101 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq108 893 0.0 seq401 143 1e-31 >seq108 Length=1047 Score = 893 bits (990), Expect = 0.0 Identities = 598/665 (90%), Gaps = 1/665 (0%) Strand=Plus/Plus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 102 CCGGGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTA 161 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 162 TATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 221 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 222 AGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCG 281 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGC 259 ||||| |||||||||| ||| | | ||| |||| | | |||| |||| | | || Sbjct 282 CTTGCCCCCAGACTTGCGCGCCGCCGATCACCCGGGCTTCTGCCCGGGGCACGCGGCGGC 341 Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 | |||||||||||| | || || ||| ||| ||||||| ||||| || || ||| ||| Sbjct 342 GCGCAGGCCAGCATCGGTTCCGGTGGTGGGACAAAGGCCTTGGGAACGTAGCTCCCCTCG 401 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 ||| |||||||||||| |||| ||||| ||| || |||| |||| ||||||||||||| Sbjct 402 GGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTCCGGCT 461 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||||| Sbjct 462 AGGATGCTGGCGTAATGGGTGCAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 521 Query 440 ATCTATGCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||||||||||||||||||||||| |||||| | |||| |||||||||||||||||||| | Sbjct 522 ATCTATGCGAGTGTTTGGGTGTCAAAACCCATCCGCGCAATGAAAGTGAACGGAGGTGAG 581 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 582 AACCCGCGAGGGGGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGC 641 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 642 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAA 701 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 702 CTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGG 761 Query 679 GGCGA 683 ||||| Sbjct 762 GGCGA 766 >seq401 Length=57623 Score = 143 bits (158), Expect = 1e-31 Identities = 176/238 (74%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 ||||||| ||| ||||||| |||||||| |||||||| ||||||| | || | || Sbjct 7670 GAAGCTCGCTCGCCGAGTCGGATTGTTTGGCCGTGCAGCTC-AAATGGGTGTTATAACTC 7612 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 |||| || ||| ||| ||| ||||||||||||||||| | ||||||| || | |||| Sbjct 7611 TTCTGAAACTAGATACTGGGAAGAGACCGATAGCGCACGATCAGAGTGACTGAGAAATGA 7552 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCA 205 ||||| | || |||||| ||| || | ||||| ||| | | ||||||||||||||| Sbjct 7551 AAAGCTC-----AACGAGAGTCAAACAGTAAGTGAAGTTGGTCACAGGGAAGCGCTTGCA 7497 Query 206 ACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTC 263 || |||||| ||| | | || | ||| || || | |||||| |||||| || Sbjct 7496 GCCGGACTTGTGCGCTGATAGCCATCAGGCTTCT-ATCCAGCGCACTCGTCTGCGCTC 7440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079987365950