Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marssonina_20coronariae_20[genbank_20GCA_5F002204255.1_202017-06-21]
589 sequences; 50,267,101 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq434 553 5e-155
seq77 309 1e-81
seq309 178 4e-42
>seq434
Length=2313
Score = 553 bits (612), Expect = 5e-155
Identities = 386/436 (89%), Gaps = 5/436 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1922 CTTTTGTTCTACTGGAGATTTCTATTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1863
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||||
Sbjct 1862 GTTTAACAGATGTGCCGCCCTAGCCAAACTCCCCACCTGATAATGTCTTCAACCTAGATC 1803
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||| ||||||||| || |||| ||| | ||| |||||||||||||| | |
Sbjct 1802 AGCCCGCGAGGGACCTTAATGCTAGAAGTTGGGCTATGACACCCAGTTCCGCTTCACTAA 1743
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||| |||||||||||||||| |||| |||||||| ||
Sbjct 1742 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 1686
Query 247 TTCTACACCTCTCAAG-TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||||| ||| | || |||||||| || ||||||||||||||||||||| ||||
Sbjct 1685 TTCTACACC-CTCTATATCTTTTCACAATATCAAACTAGAGTCAAGCTCAACAGGATCTT 1627
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1626 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTATGGTTTCGCTAAATAGTAGAT 1567
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1566 AGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATAACAAGGCAT 1507
Query 426 TTGGCTACCTTAAGAG 441
||||||||||||||||
Sbjct 1506 TTGGCTACCTTAAGAG 1491
Score = 168 bits (186), Expect = 2e-39
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1133 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAGTTGAATTACTTCACTTTGACATTC 1074
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1073 AGAGCACTAGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1031
>seq77
Length=605
Score = 309 bits (342), Expect = 1e-81
Identities = 197/214 (92%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 155
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 154 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 95
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||| ||||||||| || |||| ||| | |||| |||||||||||||| |||
Sbjct 94 AGCCCGCGAGGGACCTTAATGCTAGAAGTTGGGCTGTGACACCCAGTTCCGCTTCACTGA 35
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC 220
|||||||||||||||||| ||||||||||||||
Sbjct 34 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTC 1
>seq309
Length=665
Score = 178 bits (196), Expect = 4e-42
Identities = 101/103 (98%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 478 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 419
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635190368672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |