Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marssonina_20coronariae_20[genbank_20GCA_5F002204255.1_202017-06-21] 589 sequences; 50,267,101 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq434 553 5e-155 seq77 309 1e-81 seq309 178 4e-42 >seq434 Length=2313 Score = 553 bits (612), Expect = 5e-155 Identities = 386/436 (89%), Gaps = 5/436 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1922 CTTTTGTTCTACTGGAGATTTCTATTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1863 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||| Sbjct 1862 GTTTAACAGATGTGCCGCCCTAGCCAAACTCCCCACCTGATAATGTCTTCAACCTAGATC 1803 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||| ||||||||| || |||| ||| | ||| |||||||||||||| | | Sbjct 1802 AGCCCGCGAGGGACCTTAATGCTAGAAGTTGGGCTATGACACCCAGTTCCGCTTCACTAA 1743 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||| |||||||||||||||| |||| |||||||| || Sbjct 1742 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACCGGCGCTTGC---GCTCCCACCTA 1686 Query 247 TTCTACACCTCTCAAG-TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||| ||| | || |||||||| || ||||||||||||||||||||| |||| Sbjct 1685 TTCTACACC-CTCTATATCTTTTCACAATATCAAACTAGAGTCAAGCTCAACAGGATCTT 1627 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1626 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTATGGTTTCGCTAAATAGTAGAT 1567 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1566 AGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATAACAAGGCAT 1507 Query 426 TTGGCTACCTTAAGAG 441 |||||||||||||||| Sbjct 1506 TTGGCTACCTTAAGAG 1491 Score = 168 bits (186), Expect = 2e-39 Identities = 99/103 (96%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1133 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAGTTGAATTACTTCACTTTGACATTC 1074 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1073 AGAGCACTAGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1031 >seq77 Length=605 Score = 309 bits (342), Expect = 1e-81 Identities = 197/214 (92%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 155 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 154 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 95 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||| ||||||||| || |||| ||| | |||| |||||||||||||| ||| Sbjct 94 AGCCCGCGAGGGACCTTAATGCTAGAAGTTGGGCTGTGACACCCAGTTCCGCTTCACTGA 35 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC 220 |||||||||||||||||| |||||||||||||| Sbjct 34 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTC 1 >seq309 Length=665 Score = 178 bits (196), Expect = 4e-42 Identities = 101/103 (98%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 478 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTC 419 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 418 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635190368672