Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marssonina_20coronariae_20[genbank_20GCA_5F002204255.1_202017-06-21] 589 sequences; 50,267,101 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq5 300 3e-79 seq434 105 1e-20 seq77 105 1e-20 >seq5 Length=312 Score = 300 bits (332), Expect = 3e-79 Identities = 239/281 (85%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 18 GTACGAGAGGAACCGCTGA-TTCA-AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 75 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 76 GCCGCGAAGCTACCATTTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 135 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAGGC--TTCGGCCCCG 177 |||||||||||| | |||| |||||||||||||||||||||||||| |||||| | Sbjct 136 GAACGGGGTGATCTTGCTCCCACACATCGTAGTCGGATACGAATAGGCCGGACGGCCCTG 195 Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237 | || ||| || ||||||||| || | | ||||| || ||| ||||| || | Sbjct 196 GATCTCAGCGGGTCGGCAACGGCCGGGCGGTGGAAGTCCGCCTGGCT-AGCTGACGTTGT 254 Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||||||| ||| |||| ||||||||||||| Sbjct 255 GCAATTTTACCATGCGTGGGGTTAAAAACTTTGCAGACGAC 295 >seq434 Length=2313 Score = 105 bits (116), Expect = 1e-20 Identities = 67/70 (96%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 2246 GTACGAGAGGAACCGCTGA-TTCA-AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 2303 Query 61 GCCGCGAAGC 70 |||||||||| Sbjct 2304 GCCGCGAAGC 2313 >seq77 Length=605 Score = 105 bits (116), Expect = 1e-20 Identities = 67/70 (96%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 538 GTACGAGAGGAACCGCTGA-TTCA-AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 595 Query 61 GCCGCGAAGC 70 |||||||||| Sbjct 596 GCCGCGAAGC 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819195325696