Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marssonina_20coronariae_20[genbank_20GCA_5F002204255.1_202017-06-21]
589 sequences; 50,267,101 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq5 300 3e-79
seq434 105 1e-20
seq77 105 1e-20
>seq5
Length=312
Score = 300 bits (332), Expect = 3e-79
Identities = 239/281 (85%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 18 GTACGAGAGGAACCGCTGA-TTCA-AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 75
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 76 GCCGCGAAGCTACCATTTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 135
Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAGGC--TTCGGCCCCG 177
|||||||||||| | |||| |||||||||||||||||||||||||| |||||| |
Sbjct 136 GAACGGGGTGATCTTGCTCCCACACATCGTAGTCGGATACGAATAGGCCGGACGGCCCTG 195
Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237
| || ||| || ||||||||| || | | ||||| || ||| ||||| || |
Sbjct 196 GATCTCAGCGGGTCGGCAACGGCCGGGCGGTGGAAGTCCGCCTGGCT-AGCTGACGTTGT 254
Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||| |||||||| ||| |||| |||||||||||||
Sbjct 255 GCAATTTTACCATGCGTGGGGTTAAAAACTTTGCAGACGAC 295
>seq434
Length=2313
Score = 105 bits (116), Expect = 1e-20
Identities = 67/70 (96%), Gaps = 2/70 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 2246 GTACGAGAGGAACCGCTGA-TTCA-AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 2303
Query 61 GCCGCGAAGC 70
||||||||||
Sbjct 2304 GCCGCGAAGC 2313
>seq77
Length=605
Score = 105 bits (116), Expect = 1e-20
Identities = 67/70 (96%), Gaps = 2/70 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 538 GTACGAGAGGAACCGCTGA-TTCA-AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 595
Query 61 GCCGCGAAGC 70
||||||||||
Sbjct 596 GCCGCGAAGC 605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819195325696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |