Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq82 302 7e-80 seq236 116 6e-24 >seq82 Length=17382 Score = 302 bits (334), Expect = 7e-80 Identities = 241/283 (85%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| Sbjct 6472 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCAGT 6529 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 6530 GCCGCGACGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 6589 Query 121 GAACGGGGTGATTCTCT--CCTGCACATCGTAGTCGGATACGAATAGGCTTC--GGCCCC 176 ||||| || |||||| | || |||| |||||||||||||||||||||| || |||| Sbjct 6590 GAACGCGGCGATTCTATGCCCCGCACGTCGTAGTCGGATACGAATAGGCCTCCGGGCCAT 6649 Query 177 GAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAG-CGCGGGGCGCTCAGCTGGCGGA 235 | |||| ||||||| ||| |||| | ||| | |||| | ||||| ||| ||||||||| Sbjct 6650 GTACCTCAGCAGGCTGGCGACGGCCCTCCGGGAGAAGCCCCGGGGGGCT-GGCTGGCGGA 6708 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||| |||| |||||||||||| |||||||||| Sbjct 6709 TTGCAATGTCACAGCGCGCGGGGATAAATCCTCTGCAGACGAC 6751 Score = 302 bits (334), Expect = 7e-80 Identities = 241/283 (85%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| Sbjct 15263 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCAGT 15320 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 15321 GCCGCGACGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 15380 Query 121 GAACGGGGTGATTCTCT--CCTGCACATCGTAGTCGGATACGAATAGGCTTC--GGCCCC 176 ||||| || |||||| | || |||| |||||||||||||||||||||| || |||| Sbjct 15381 GAACGCGGCGATTCTATGCCCCGCACGTCGTAGTCGGATACGAATAGGCCTCCGGGCCAT 15440 Query 177 GAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAG-CGCGGGGCGCTCAGCTGGCGGA 235 | |||| ||||||| ||| |||| | ||| | |||| | ||||| ||| ||||||||| Sbjct 15441 GTACCTCAGCAGGCTGGCGACGGCCCTCCGGGAGAAGCCCCGGGGGGCT-GGCTGGCGGA 15499 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||| |||| |||||||||||| |||||||||| Sbjct 15500 TTGCAATGTCACAGCGCGCGGGGATAAATCCTCTGCAGACGAC 15542 >seq236 Length=550 Score = 116 bits (128), Expect = 6e-24 Identities = 153/206 (74%), Gaps = 16/206 (8%) Strand=Plus/Plus Query 88 TGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGA-TTCTCTCCT--GCAC 144 ||||||||||||||||||||||||||||||| |||||| ||||| |||| | || ||| Sbjct 1 TGGCTGAACGCCTCTAAGTCAGAATCCATGCTAGAACGCGGTGATTTCTTTGCTCCACAC 60 Query 145 ATCGTAGTCGGATACGAAT-AGGCTT--------CGGCCCCGAACCTTAGCAGGCCGGCA 195 | ||| |||||||||| |||| | || | | ||||| |||||||| ||| Sbjct 61 AATATAGATGGATACGAATAAGGCGTCCTTGTGGCGTCGCTGAACCATAGCAGGCTAGCA 120 Query 196 ACGG-GCGTCCCGCGGAA--GCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGC 252 |||| || |||||| || ||| ||| ||||||| |||||||| ||| ||| Sbjct 121 ACGGTGCACTTGGCGGAAAGGCCTTGGGTGCT-TGCTGGCGAATTGCAATGTCATTTTGC 179 Query 253 GCAGGGATAAATCCTTTGCAGACGAC 278 | |||||||||| |||| | ||||| Sbjct 180 GTGGGGATAAATCATTTGTATACGAC 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819197722368