Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq219 140 3e-28 seq117 107 2e-18 >seq219 Length=270999 Score = 140 bits (154), Expect = 3e-28 Identities = 404/619 (65%), Gaps = 2/619 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| ||||| || |||| || |||||||| || || || |||| |||||| | Sbjct 154100 CATAAACAGATCTGGGGTCCAAAGAGCGTAGAAAAGGTCACGAGCTCTGACCTCCTCCTT 154041 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || || |||||||| | || | ||| || || | || || ||||| ||||||||||| Sbjct 154040 TCCATGGTTTTTGCGGAGATCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTA 153981 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 ||| || || | ||| || ||| ||||| || || ||||| | || |||||| Sbjct 153980 GATAGCAAAAGCACCCGGCCGCTTGTTTCCACCCTGATCCACGTATCTCGCAGTATTGTT 153921 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 ||| ||||| | ||| || |||| || ||||| ||| ||||| ||| | ||| || Sbjct 153920 GAATACACGGAGCATAGGGACGATTCCATTAGAAGAGCCGTTGGTTCCGGCAATGTAAGA 153861 Query 66580 TCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGG 66638 || |||| | || || ||| || || ||||||||||| || || ||||| || || Sbjct 153860 GCC-CGTGGCACGGATTCGGTGGACGTTGAGACCAATACCGCCTGCAGTCTTGGAAATCA 153802 Query 66639 CAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGA 66698 || || || || | || || || ||| || | | || | | Sbjct 153801 TCGCGCAGGTCTTCAAGGTATCATAGATACCTTCGATGCTATCTGCTCTCATATCGACCA 153742 Query 66699 GGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGT 66758 || | ||||| || || | | ||| ||| |||| ||| || || || | || | Sbjct 153741 GGAAACATGAGGCCAGCTGAGCCTGGGGAGTGCCGGCATTGAACAGAGTCGGCGAGGCAT 153682 Query 66759 GCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGC 66818 | |||||||| | ||||||| | || || ||||| ||| | ||||| | | || Sbjct 153681 GGGTAAAGTACTTCTGAGACATCAAGTTATATGTCTCAATGGCCCTTTCAATATCGTTGC 153622 Query 66819 CATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCT 66878 | || || || | ||| |||||||| | || || || || || ||| | | | Sbjct 153621 CGTGTATTCCAACAGCAACCCGCATCAGCATGTGCTGGGGACGCTCTGCCACCTTCCCAT 153562 Query 66879 TGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAAT 66938 |||| | | | ||| || || || || ||||||| ||| ||| | ||| || |||| Sbjct 153561 TGATCCGTAGCAGGTATGAACGCTCAAGAGTCTTGAAACCGAAGAAATTGTAGTTAAAAT 153502 Query 66939 CGTTAGCATGCACGATGGC 66957 || | | | |||||| || Sbjct 153501 CGCGATCGTACACGATTGC 153483 Score = 129 bits (142), Expect = 5e-25 Identities = 703/1100 (64%), Gaps = 48/1100 (4%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || |||||||| || |||| || ||| ||| |||| | |||||||||||||| ||| Sbjct 155399 TCCACCGTGAATTGAATCGGTGCAGAAGCTGCCATGGTTCGGAGATAGTACATGCCAGTC 155340 Query 65138 TTGAGGCC-AGCA--CGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGG 65193 || | || | | | || |||| || ||||| | || |||| |||| | | || Sbjct 155339 TTCAATCCCATCTTCCACCCAGCAAAG---TGCAT-GCTGGTAATCTTGCCCATGGTAGG 155284 Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253 ||| || || ||||| | ||||||| ||| || ||||| |||||| |||||||| Sbjct 155283 CTCCTTCATGTGGATATTGAGCGACTGAGACTGGTCAATGTATGCACCACGGTCTGCAGC 155224 Query 65254 CATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 ||| | | ||| ||| || ||||||||||| |||||||| ||| | | | | Sbjct 155223 CATCTGCAGGATGTTACGCTGAGAGATCTCCCAGACAGTCTTGTAGAGG-GCCTTGATGG 155165 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 | ||||| | ||||| ||| || ||||||| ||||||||||| || || Sbjct 155164 CTGCGGGAATATTGGGAATGTTCTGAACAGAACCACCCTCCGCAATAATGCGGTTCTTCA 155105 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGA-TTGATGACT 65431 | || ||||| | |||||| |||| ||| | | || ||| | | |||| ||| Sbjct 155104 TGTTGTCAGACCAGAGACCCAAGTCGACAAGGTCCTTAAG-AAGCCATGGGTTGACAACT 155046 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || || | || || || || || ||||| || ||| || || ||| | Sbjct 155045 TGGAATTCTCCAGCAAGGACTCGGCGAGAGTAAATGTTCGAAGTGTACGGCTCGAAGCAC 154986 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| || ||| ||||| ||| || ||| || ||||| || || |||| ||| | Sbjct 154985 TCATTGAAGCCAAGAATCTGGCTGGTGCTTGCCGTCGGCATAGGGGCCACCAGCAAACTG 154926 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACATCGG 65607 || |||| |||| | | |||| ||| ||| ||| |||| | ||| | || Sbjct 154925 TTGCGCACGCCGTGCTCTGCAATCTTGGCCTTGAGCGAAT----CCCAATCCCAGA--GG 154872 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | || | ||| | |||||| || | ||| ||| | || | | || || Sbjct 154871 TCG---GTGGGTTTCCT-GTCCCACATGTCGTATTGGAGGATACCTTGGGAGACGGGAGA 154816 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA-CAGCTGGTCTCGAGTG 65726 || | | || ||| || ||||||||| |||| ||| | || || | Sbjct 154815 GCCTTCATATGTCTCATACGTCCCAAACTCCTTGGCCAGTTCCGCAGACGCAGTCAAG-G 154757 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | | || ||||| |||||||| | || || | | || || | || Sbjct 154756 CACCGTGGTAGATGGTTTCGAAAATCTGAATGTTCAGCTGTCTCGCTTCGGCCGAGTCAA 154697 Query 65787 ACGGCATACCCATCAGGACA--AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGG 65844 | |||| | || ||| | || | |||||| ||||| | || |||| | | ||||| Sbjct 154696 ATGGCAGGCGCA--AGGCAAGGAAGGCGTCGGCAAGACCATTGACACCAAGAGCAATGGG 154639 Query 65845 ACGATGACGCAAATTGGAACGTCTCGCCT-CAGGTACAGGGTAGTAATTGATATCGATAA 65903 |||||| || | |||| | ||| | || | || ||||| ||||| || || || |||| Sbjct 154638 ACGATGGCGAAGATTGCT-CTTCTTGGCTTCGGGAACAGGATAGTAGTTAATGTCAATAA 154580 Query 65904 TGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAA 65962 | |||| || || | || ||||| | | | | ||| | | | ||||| | Sbjct 154579 TCTTGTTCAGGTTCCGGACAAGAACCTGCACAACTTCAT-GCAGCTTTCCAAAATCGTA- 154522 Query 65963 TGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022 || | ||| | | || | |||||| | ||||||||||||||||| | | Sbjct 154521 --TTCACCACG---------GACAGAATCAACAAACGTAGGAAGGGCAAGAGATGCCAAG 154473 Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 || || || || | ||||| |||||| | ||||||||||| || ||||| || || | Sbjct 154472 TTACAAACTGCAACTTCGTCCGGAGCGCTGTACTCGACAATCTCAGTGCAGAGGTTGGAG 154413 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 | || || || || | |||| || || ||||| | ||||| || ||||| |||| | Sbjct 154412 CTACGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTTCTGTTGCAAGCGTCCTTATACAAC 154353 Query 66143 ATGTACGGAGTGCCGGTCTC 66162 || | || | || ||||| Sbjct 154352 ATAAAGGGGTTTCCAGTCTC 154333 >seq117 Length=965375 Score = 107 bits (118), Expect = 2e-18 Identities = 270/410 (66%), Gaps = 3/410 (1%) Strand=Plus/Minus Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||| |||||| ||||| | ||||| ||||||||||| ||||| | ||||| ||| Sbjct 188316 TTCTTCTCTGGATCCTTTGCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGT 188257 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 || || ||| ||| ||| |||| || ||||| || || | || || || ||| Sbjct 188256 CTTACTTTCTCCAACGAGCTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGCTTGC 188197 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || | ||| | |||| || || || || || |||| || || | Sbjct 188196 CTGTTGTTCTCTC---ATCTCAACAACCGCCCCAGCAAGCAGGTTGTGCAGGACATCATC 188140 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 ||| || || | || || ||||||| || || || || | || || | || || Sbjct 188139 ACTGAAGCTGTCGCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTC 188080 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||||| || |||| |||||||| || |||||||| || | || |||| Sbjct 188079 GGCATGAATTCCAATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGACTCCTGGTT 188020 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 | | || | | | ||| || | | |||||||| || |||||||||| || Sbjct 188019 GCGCTTGGCAACAGCAAGTACTACAACTCCACCAACCCATTCGACTTCATGGACAACATC 187960 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || |||| ||| || || || || |||||||| || || |||||||| || Sbjct 187959 TCCCTGGCTGGTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCA 187910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566609381680