Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1966 98.7 3e-18 seq2479 96.9 9e-18 seq2000 96.9 9e-18 >seq1966 Length=36277 Score = 98.7 bits (108), Expect = 3e-18 Identities = 281/424 (66%), Gaps = 20/424 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| Sbjct 27204 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGCCAATCATTGAGACAGCTGTTGT 27145 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | ||||| ||| ||||||||||||| Sbjct 27144 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTCCGCTACCTTAGGA 27085 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGCTT---CGCGTT 179 || | || | || ||||||| || | |||| ||| |||| ||||| || Sbjct 27084 CCCTCATCGGTAAGGCCGCCATTGATTGGGGTTTCCTTCAAAACCTAGCTTATATTAGTC 27025 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 ||||| | |||||| || || |||||| |||||| | |||| | | | Sbjct 27024 GGCTAAGAATCTTCGTTAACCAGCCAACATTGGGCAGAATTCACACTCAATACTTTGATT 26965 Query 240 T-TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG--CAGCGGCCTGGTAT-CT 294 | || | || |||| |||||| |||||| | |||||||||| || | | ||| | Sbjct 26964 TGTCATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCGTACAACACCACTCTATGCC 26905 Query 295 TCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAA 354 || | | | | |||| | | ||| | | ||| |||||| |||| || Sbjct 26904 TC--CTATCCTTAACTTA-----ATATTACTT-AAGAAGAATGGCACACCTTATCCCTAA 26853 Query 355 GTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCT 414 ||||||||| | ||||||| |||||||| ||| ||||| |||||| |||| || Sbjct 26852 GTTACGGTGTCATTTTGCCGAGTTCCTTAATGATTGTTAACTCAAACGCCTTTGTATACT 26793 Query 415 CTAC 418 |||| Sbjct 26792 CTAC 26789 >seq2479 Length=3932 Score = 96.9 bits (106), Expect = 9e-18 Identities = 276/421 (66%), Gaps = 30/421 (7%) Strand=Plus/Plus Query 10 ACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATC 69 |||| |||| ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 2051 ACTGTATCTGCACAGTTATTCCAATTTCACTGAGACAATCATTGAGACAGCTGTTGTATC 2110 Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 |||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||||| Sbjct 2111 GTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGACCC 2170 Query 130 TTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGCTTCGCGTTA----G 181 | || | || ||||||| || | |||| ||| |||| ||| | | |||| Sbjct 2171 TCATCGGTAAGGCCGCCATTGATTGGGGGTTCCTTCAAAACCTAGCCTAGTGTTATTTGA 2230 Query 182 CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT- 240 |||| || |||||| || || |||||| |||||| | |||| | | || Sbjct 2231 CTAAGAAAATTCGTTAACCAGCCAACATTGGGCAGAAATCACACTCAATACTTTGATTTA 2290 Query 241 TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG--CAGCGGCCTGGTATCTTCG 297 | | || |||| |||||| |||||| | |||||||||| || | | | ||| Sbjct 2291 TTATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCGTACAACACCATTTTAT----- 2345 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 | | ||| | | ||| | | | ||| |||||| |||||||||| Sbjct 2346 ----GTCTCCTCTT--------ATTACTTAATAAT-AATGGCACACCTTATCCCGAAGTT 2392 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| | | |||||| |||||||| ||| |||||| |||||| |||||||||| Sbjct 2393 ACGGAGTCAATTTGCCGAGTTCCTTAATGATTGTTATCTCAAACGCCTTTGTATTCTCTA 2452 Query 418 C 418 | Sbjct 2453 C 2453 >seq2000 Length=16744 Score = 96.9 bits (106), Expect = 9e-18 Identities = 276/421 (66%), Gaps = 30/421 (7%) Strand=Plus/Minus Query 10 ACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATC 69 |||| |||| ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 14694 ACTGTATCTGCACAGTTATTCCAATTTCACTGAGACAATCATTGAGACAGCTGTTGTATC 14635 Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 |||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||||| Sbjct 14634 GTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGACCC 14575 Query 130 TTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGCTTCGCGTTA----G 181 | || | || ||||||| || | |||| ||| |||| ||| | | |||| Sbjct 14574 TCATCGGTAAGGCCGCCATTGATTGGGGGTTCCTTCAAAACCTAGCCTAGTGTTATTTGA 14515 Query 182 CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT- 240 |||| || |||||| || || |||||| |||||| | |||| | | || Sbjct 14514 CTAAGAAAATTCGTTAACCAGCCAACATTGGGCAGAAATCACACTCAATACTTTGATTTA 14455 Query 241 TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG--CAGCGGCCTGGTATCTTCG 297 | | || |||| |||||| |||||| | |||||||||| || | | | ||| Sbjct 14454 TTATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCGTACAACACCATTTTAT----- 14400 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 | | ||| | | ||| | | | ||| |||||| |||||||||| Sbjct 14399 ----GTCTCCTCTT--------ATTACTTAATAAT-AATGGCACACCTTATCCCGAAGTT 14353 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| | | |||||| |||||||| ||| |||||| |||||| |||||||||| Sbjct 14352 ACGGAGTCAATTTGCCGAGTTCCTTAATGATTGTTATCTCAAACGCCTTTGTATTCTCTA 14293 Query 418 C 418 | Sbjct 14292 C 14292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260766891392