Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1900 123 9e-23 seq648 91.5 6e-13 >seq1900 Length=19921 Score = 123 bits (136), Expect = 9e-23 Identities = 218/318 (69%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 12728 TTGAGAACATCGTAAAAGAAAACTTTCATGCCTAGACACTCTGCTAGGACAGAGACCTGA 12787 |||| |||||||| ||| ||||||||||||| ||||||| |||||||| | ||| Sbjct 16386 TTGACGACATCGTAGTAGATGACTTTCATGCCTAATGACTCTGCCAGGACAGAAAGCTGT 16327 Query 12788 GAACCAATGTTACCATAACCTACTATACCTAGGGTCTTTCCTCTAACTTCACGGCAACCT 12847 | |||| | || || || ||||| || || ||||||||||| ||||| | ||| ||| Sbjct 16326 GCTCCAACATGTCCGTACCCAACTATCCCAAGCGTCTTTCCTCTTACTTCCCAGCAGCCT 16267 Query 12848 TGAGAAGTCTTGTTCCAAATGCCTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGA 12907 || ||||||||| | || ||| | || ||||| | ||| |||| ||| | Sbjct 16266 GCGGAGACCTTGTTCCACGTTCCAGCGTGCATCTCATTGTTGCGATCGCCAATCTGCCTC 16207 Query 12908 GAAAGATTAATTAGTTGTCCTATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGA 12967 | || ||| | ||| || || |||||||||| | | ||| | |||||| Sbjct 16206 GCGAGTGCAATGATGGTTCCGATCATCTGCTCTGCCACTGAGCGCGAATTGGAGAAGGGA 16147 Query 12968 GAATTAAAGACTGCAATGCCTAGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCA 13027 || || ||||| || || || | || || || | |||| ||||||| | ||| Sbjct 16146 GAGTTGAAGACGGCGATTCCCATTTCGGCGGCATACTGGAGATCGACCTGATTGGTGCCA 16087 Query 13028 ATGCAGAAGCATCCTATG 13045 ||||||||||| || ||| Sbjct 16086 ATGCAGAAGCAGCCGATG 16069 >seq648 Length=88251 Score = 91.5 bits (100), Expect = 6e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||||||||| ||| |||||||| | | ||||||||||| ||||| || | ||| | Sbjct 36299 CAATAGTCATTCGACTGGGAATGGCGTGTGGGTTGATGATAATGTCGGGTGTGAGGCCAT 36358 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCAT 364544 | || |||| ||||||||||| | | ||| ||||||||| |||||||| | | Sbjct 36359 CGGCACTAAAAGGCATATCTTCCTGTCTGTAGGTGATACCAATGGTGCCCTTTTGTCCGT 36418 Query 364545 AGCGAGAAGCAAACTTGTCGCCAAT 364569 ||||| || || ||||| ||||| Sbjct 36419 GACGAGAGGCGAATTTGTCACCAAT 36443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884837447733111