Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq464 720 0.0
seq20 165 3e-38
>seq464
Length=5549
Score = 720 bits (798), Expect = 0.0
Identities = 563/663 (85%), Gaps = 12/663 (2%)
Strand=Plus/Minus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1381 TGTAAAGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATAT 1322
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1262
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1261 TGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTC 1202
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTGCGG 261
|||||||||| | |||| ||| || || ||| | |||||||||||| | |
Sbjct 1201 ATGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTC-CCTGGTGCACTCTTCCG-GC 1144
Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321
|||||||||||||| ||| | |||||||||| |||||||||||| |||| ||
Sbjct 1143 CCAGGCCAGCATCAGTTCGCTGTGGGGGATAAAGGCTTCGGGAATGTGGCTCCCT--CGG 1086
Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAG 381
| ||||||||||||| ||| ||| | | | |||||||||| ||||| || ||
Sbjct 1085 GAGTGTTATAGCCCGTCGTGTAATACCCTGTGGC-GGACTGAGGTTCGCGCATTCGCAAG 1027
Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441
||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | |
Sbjct 1026 GATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTC-GTCTT 968
Query 442 C-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500
| |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| ||
Sbjct 967 CGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA- 909
Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560
| || ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 908 ---GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCAT 852
Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620
| | |||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 851 ACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAACT 792
Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||
Sbjct 791 CTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGGGG 732
Query 681 CGA 683
|||
Sbjct 731 CGA 729
>seq20
Length=135117
Score = 165 bits (182), Expect = 3e-38
Identities = 168/212 (79%), Gaps = 8/212 (4%)
Strand=Plus/Plus
Query 245 GGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGA 304
|||||||||||| | | |||||||||||||| ||| | |||||||||| |||||
Sbjct 52273 GGTGCACTCTTCCG-GCCCAGGCCAGCATCAGTTCGCTGTGGGGGATAAAGGCTTCGGGA 52331
Query 305 ATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCC-TGGACTGA 363
||||||| |||| ||| ||||||||||||| ||| ||| | || | ||||||||
Sbjct 52332 ATGTGGCTCCCTC--GGGAGTGTTATAGCCCGTCGTGTAATAC--CCTGTGGTGGACTGA 52387
Query 364 GGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACG 423
||| ||||| || ||||||||||||||||||| | |||| ||||||||| ||||||
Sbjct 52388 GGTTCGCGCATTCGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACG 52447
Query 424 GACCAAGGAGTCTAACATC-TATGCGAGTGTT 454
|||||||||||| | || ||||||||||||
Sbjct 52448 GACCAAGGAGTC-GTCTTCGTATGCGAGTGTT 52478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079985478350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |