Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq86 443 2e-119 >seq86 Length=170212 Score = 443 bits (490), Expect = 2e-119 Identities = 1240/1884 (66%), Gaps = 62/1884 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| | | |||||| |||| || | || ||||||||||||||| Sbjct 128051 TCTACAGTGAACTGGATGGGCTGAGCAGCAGCCTGCGTACGGAGGTAGTACATGCCGGTC 127992 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| || ||| | ||||||||| | || |||| |||| | | || || Sbjct 127991 TTGAGACCCATCTTCCAGCCGGCGAAATGCAT-GCTGGTAATCTTGCCCATGGTGGGTTC 127933 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 | || || || || | ||||| |||||| ||| | ||||||||| |||||||| Sbjct 127932 GCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAAGGCACCACGATCGGCAGCCAT 127873 Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 | ||||| |||| | || ||||||||||||||||| || || | | | | | Sbjct 127872 CTTGACAATGGTACGCTGA---GAAATCTCCCAGACGGTCTTATAGAGA-GCCTTGATGT 127817 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 || | ||||| | |||| ||||| ||||| | ||||| ||||| || || Sbjct 127816 CATTGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTTCA 127757 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGT-TGAACCAAGTGACGA-TTGATGAC 65430 | | || ||||| | |||| || | ||||| ||| ||| | | |||| ||| Sbjct 127756 TGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAG--AAGCCAGGGGTTGACGAC 127699 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||||||||||||| || ||||| || |||||||| || ||| || || ||| | Sbjct 127698 CTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCA 127639 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| ||||| || | ||| || ||||| ||||| ||||| | || || Sbjct 127638 CTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACT 127579 Query 65551 GTTTCGCAATCCGTTCATTTCAATGT------TGTGACGCAATTCGTCCCAGTTCCACAT 65604 ||| || | |||| | | | |||| || || ||| | ||||| ||| | Sbjct 127578 GTTGCGAACACCGTACTTCTTGATGTCCGCCTTGAGA-GCAGT-----CCAGTCCCAGA- 127526 Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG---- 65660 |||| | | | | || |||||| || | ||| ||| |||| |||| Sbjct 127525 -GGTTGGTAGGGGTGA----CGTTCCACATGTCGTATTGGAGGATTCC----CTGGGAGA 127475 Query 65661 CCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCT 65720 | || || || | | | ||||| |||| ||||||||| || || || || Sbjct 127474 CGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAG 127415 Query 65721 CGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGC 65780 || ||||| || |||||||||||||| | || || | | ||| | || Sbjct 127414 TAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGCCGCGTCAG 127355 Query 65781 TCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 ||| | ||||| | | | |||| || || ||||| ||||| || | ||| | Sbjct 127354 AATCGAAGGGCATGCGGAGAGCCAAGAAAGCATCAGCAAGACCCTGAACACCGACACCAA 127295 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 ||||||| ||||||| ||| ||||| || ||||||| ||||| || | Sbjct 127294 TGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCCTTAACGGGGTAGTGGTTGATGTCAA 127235 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCA 65959 | || || | ||||| || || || || ||| ||| | | ||| || Sbjct 127234 TGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGT-GCAGCTTCTTGAAGTCG 127176 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 || || || | | || | | | ||| || |||||| ||||| || Sbjct 127175 TAA----------GA--GGCATTCTCGTAGTCGATAAAGGCGGAAAGGGCGAGAGAGGCA 127128 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 |||||||| || || | ||| || ||||| | ||||||| ||| || |||||||| || Sbjct 127127 AGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGTTG 127068 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || ||| ||||| |||| |||| || ||||||||||| ||||| ||||||||||| Sbjct 127067 GAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAG 127008 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | |||| | || |||| |||||| |||| ||| | |||||| | |||||| | Sbjct 127007 AGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGG 126948 Query 66200 GCCTTCACCGTACGTACCGCCCTACCTTTGCGTT-CGTAATGTTCGTAGAGGTGTTCGAA 66258 ||||| || || | | | |||| | || | || |||| | |||||| || |||||| Sbjct 126947 GCCTTGACGGT-CTTGCGACCCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAA 126889 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 ||||| | || |||| || | || |||| ||| || ||||| || | ||| | Sbjct 126888 CTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCCACTG 126829 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 || | ||| || ||||| ||| || ||||| || ||||||||||| ||||||||| Sbjct 126828 GCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAGAGATC 126769 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 ||| || || ||| || | ||||| || ||||| | ||| |||||||| |||| || Sbjct 126768 GCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATC 126709 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 ||| ||||| || || |||||||||||||| | || ||| ||| |||||| ||||| Sbjct 126708 GGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCCACCCTGGTC 126649 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 |||||||| ||| |||||||||||||| | ||| || |||| ||||| ||| |||| Sbjct 126648 AACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGATGTGCC 126589 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 ||||| || ||||| ||| || || || || ||| | || ||||| ||||| Sbjct 126588 GTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAGACCGATACC 126529 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAAT 66675 || ||| |||| ||||| || || || | | || | | ||||| || || Sbjct 126528 GCCAGCCATCTTAGAGATCATGGCGCA---GGTCTTGAGGGTATCGTAGATGCCCTCGAT 126472 Query 66676 GGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC 66735 ||| |||| ||| | ||| |||| ||| || ||||| | ||| || |||| Sbjct 126471 ACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTACCGGC 126412 Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 |||||||||||| | |||||| || ||| | | | |||||| ||||| ||||| Sbjct 126411 GTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGAGGTTGTAAGTCTC 126352 Query 66796 GATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTG 66855 ||||| |||| || || || || |||| ||| ||||| | | || || Sbjct 126351 AATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGATCATGTGCTG 126292 Query 66856 AGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGAT 66915 || || || | | | | | | || | | | ||| || ||||| |||||||||| Sbjct 126291 GGGACGCTCAGCAATCTGGCCATCGAGCTTAAGAAGGTATGATCGTTCGAGGGTCTTGAA 126232 Query 66916 ACCAAAGTACGAGTAATTGAAATC 66939 || ||||| ||| ||||| || Sbjct 126231 GCCGAAGTATTGGTAGTTGAAGTC 126208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566265361120