Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq63 91.5 6e-13 seq118 89.7 2e-12 >seq63 Length=219621 Score = 91.5 bits (100), Expect = 6e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698 ||||||||||| | ||| | |||||||||| || || | ||||| || |||| || Sbjct 168912 GGCGCCGTAGGCGATCAAGCAATCGCGCTCCATCTCTCCGAGACGGAGACCACCGTCGCG 168971 Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTG 448758 | ||| ||||||||||| |||||||||| | | || || | | |||| ||| Sbjct 168972 TGAACGGCCTTCGGTGGGCTGGCGCGTGAGGATGGCGCGAGGGCCGCGCGAGCGCGAGTG 169031 Query 448759 CATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACATG 448816 |||||| ||| ||| |||||||||| |||| |||||| ||| ||| | | ||| Sbjct 169032 CATCTTGTCCTGTACCATGTGCTTGAGGCGCTGGTAGAAGATGGGGCCGTTGTAGATG 169089 >seq118 Length=126874 Score = 89.7 bits (98), Expect = 2e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 21708 GGGGTCGAGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAG 21767 ||||| |||||||||| || | || || |||| ||||||||| | |||| ||||| Sbjct 98219 GGGGTATAGATGCGTTCGAGAACCAGCTGCGCGACGCGATCGCCCTCGTTGACGACAAAG 98278 Query 21768 TCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACG 21827 ||| ||| ||||||||||| || | ||| ||| | ||| | || ||||| | Sbjct 98279 TCCACGTCCGAGTGGTTGAACAGGAGAACCTTGACTTGGCCGCGGTAGTCGGCGTCGATG 98338 Query 21828 ACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGG 21887 || |||||||| ||||| | |||||| || || || || | ||| |||| |||| Sbjct 98339 ACGCCGGCGCCAACGTCAATGAAGTTCTTGGCTGCTAGGCCGGAGCGGGGGGCGATGCGG 98398 Query 21888 CCGT 21891 |||| Sbjct 98399 CCGT 98402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084729404331684