Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq164 228 6e-55
seq244 154 1e-32
>seq164
Length=316633
Score = 228 bits (252), Expect = 6e-55
Identities = 451/662 (68%), Gaps = 4/662 (1%)
Strand=Plus/Plus
Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358
|| || | ||| | ||| || || | || || ||||| ||| || | || || |||
Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121
Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418
|| || |||||||| | ||||| || || ||| || | || |||||||| | |
Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGA 150181
Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478
|| ||||| | || | |||||| |||||||| || || ||||||||||| | ||| |
Sbjct 150182 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGA 150241
Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
|| || ||||| || |||||||| || || |||||| |||| || | ||| ||
Sbjct 150242 CGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGG 150301
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
| ||| || || || | |||||||| ||| | || ||| || || || |||
Sbjct 150302 ATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGA 150361
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTC 66658
|| ||||||||||||||||| || || ||||| || || |||||| || ||
Sbjct 150362 TGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTG 150421
Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718
| || || |||||| ||| |||||||| | |||| |||| || | |||
Sbjct 150422 TCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGT 150481
Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778
||| || ||| | || ||||||||| || | || || || ||||| | | |||
Sbjct 150482 GGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGAC 150541
Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACA 66837
||||| || || |||||||| | | ||||||| |||||| ||||| || | || |||
Sbjct 150542 ATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACA 150601
Query 66838 TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGG 66896
||||| || | || |||||| ||||| | || || || ||||| | | ||| |
Sbjct 150602 -CGCATAAGCATGTGTTGAGGACGTTC-AGCAACCTTGCCATTGATTCTGAGCAGGTATG 150659
Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGG 66956
| ||||| |||||||||| ||| ||| || || |||||||| ||| ||||||||
Sbjct 150660 ATCGTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTCATACACGATGG 150719
Query 66957 CC 66958
||
Sbjct 150720 CC 150721
Score = 122 bits (134), Expect = 7e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060
||| || |||||||| | | |||||| || || | ||| || |||||||| ||||| |
Sbjct 149715 GGGTAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAAT 149774
Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120
|| || ||||| || ||| | ||| || || ||||| |||| || || ||||||||
Sbjct 149775 GATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCG 149834
Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180
||||||||||||||||| | ||| || || | || |||||| |||||||| | |||
Sbjct 149835 GTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGAT 149894
Query 66181 GGCGTGCCAAAG 66192
|| | ||| ||
Sbjct 149895 TGCATACCACAG 149906
>seq244
Length=165466
Score = 154 bits (170), Expect = 1e-32
Identities = 216/297 (73%), Gaps = 7/297 (2%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| |||||||| ||||| |||||||| |||||||| | |||||| | ||| |
Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852
Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202
|||||||| | | |||||| | ||| || | || || || | |||||
Sbjct 56851 TCCAAAGATCTCCACGACTGGAACAAGCGATTGAATGA-CGACGAGCGCTTCTTCATCTC 56793
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| || | || ||||| ||||| || || || || ||||| |||||||| | || ||
Sbjct 56792 CCACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCG 56733
Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || | || || ||||| | ||||||||||| ||||||||||| ||||| |
Sbjct 56732 ATTCA-GCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGA 56674
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378
||||||| ||||||| |||| |||| |||||||||| || |||||||| ||||
Sbjct 56673 TGGAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACATACATCAGCGAGC 56617
Score = 143 bits (158), Expect = 2e-29
Identities = 295/436 (68%), Gaps = 7/436 (2%)
Strand=Plus/Minus
Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557
|| ||||| | || |||||| | || ||||| || | ||||| | ||||| ||| |
Sbjct 56445 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATCTTCTGGCTC 56386
Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617
||||| ||||| || ||||| ||||| |||||| ||||||| | || || || ||||||
Sbjct 56385 AAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCTCGTGACGAG 56326
Query 61618 GGCATGCATTGTGATTTTGC-TGTTTTG-CTATTCAAACGCTATCTGGTGAATCGTCCGT 61675
|| ||||| ||| ||||| || | || ||| || | | | || ||
Sbjct 56325 GGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCACCTCAAGTCG-----CGCCCAA 56271
Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735
|| || |||| || || | |||||| || || || || ||||| || ||
Sbjct 56270 GCAAGCAGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGT 56211
Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795
| || ||||||| | |||| ||||||||||| || |||| ||||| ||||
Sbjct 56210 CCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGCCAGTACATTG 56151
Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855
| |||||||||||||||||| | | | | || | || | |||| || | | |
Sbjct 56150 AGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTACCA 56091
Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915
| || ||||| || ||||| | || || |||| |||||||| || || |||||||| |
Sbjct 56090 ATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGC 56031
Query 61916 GTGTAGGCGACTATCA 61931
|||| || ||||| ||
Sbjct 56030 GTGTTGGTGACTACCA 56015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397565940722000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |