Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq164 228 6e-55 seq244 154 1e-32 >seq164 Length=316633 Score = 228 bits (252), Expect = 6e-55 Identities = 451/662 (68%), Gaps = 4/662 (1%) Strand=Plus/Plus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || || | ||| | ||| || || | || || ||||| ||| || | || || ||| Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || |||||||| | ||||| || || ||| || | || |||||||| | | Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGA 150181 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || ||||| | || | |||||| |||||||| || || ||||||||||| | ||| | Sbjct 150182 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGA 150241 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || || ||||| || |||||||| || || |||||| |||| || | ||| || Sbjct 150242 CGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGG 150301 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 | ||| || || || | |||||||| ||| | || ||| || || || ||| Sbjct 150302 ATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGA 150361 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTC 66658 || ||||||||||||||||| || || ||||| || || |||||| || || Sbjct 150362 TGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTG 150421 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | || || |||||| ||| |||||||| | |||| |||| || | ||| Sbjct 150422 TCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGT 150481 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 ||| || ||| | || ||||||||| || | || || || ||||| | | ||| Sbjct 150482 GGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGAC 150541 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACA 66837 ||||| || || |||||||| | | ||||||| |||||| ||||| || | || ||| Sbjct 150542 ATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACA 150601 Query 66838 TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGG 66896 ||||| || | || |||||| ||||| | || || || ||||| | | ||| | Sbjct 150602 -CGCATAAGCATGTGTTGAGGACGTTC-AGCAACCTTGCCATTGATTCTGAGCAGGTATG 150659 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGG 66956 | ||||| |||||||||| ||| ||| || || |||||||| ||| |||||||| Sbjct 150660 ATCGTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTCATACACGATGG 150719 Query 66957 CC 66958 || Sbjct 150720 CC 150721 Score = 122 bits (134), Expect = 7e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 ||| || |||||||| | | |||||| || || | ||| || |||||||| ||||| | Sbjct 149715 GGGTAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAAT 149774 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 || || ||||| || ||| | ||| || || ||||| |||| || || |||||||| Sbjct 149775 GATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCG 149834 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 ||||||||||||||||| | ||| || || | || |||||| |||||||| | ||| Sbjct 149835 GTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGAT 149894 Query 66181 GGCGTGCCAAAG 66192 || | ||| || Sbjct 149895 TGCATACCACAG 149906 >seq244 Length=165466 Score = 154 bits (170), Expect = 1e-32 Identities = 216/297 (73%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| |||||||| |||||||| | |||||| | ||| | Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852 Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 |||||||| | | |||||| | ||| || | || || || | ||||| Sbjct 56851 TCCAAAGATCTCCACGACTGGAACAAGCGATTGAATGA-CGACGAGCGCTTCTTCATCTC 56793 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| ||||| || || || || ||||| |||||||| | || || Sbjct 56792 CCACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCG 56733 Query 61263 TTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || | || || ||||| | ||||||||||| ||||||||||| ||||| | Sbjct 56732 ATTCA-GCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGA 56674 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| ||||||| |||| |||| |||||||||| || |||||||| |||| Sbjct 56673 TGGAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACATACATCAGCGAGC 56617 Score = 143 bits (158), Expect = 2e-29 Identities = 295/436 (68%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || ||||| | || |||||| | || ||||| || | ||||| | ||||| ||| | Sbjct 56445 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATCTTCTGGCTC 56386 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| ||||| || ||||| ||||| |||||| ||||||| | || || || |||||| Sbjct 56385 AAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCTCGTGACGAG 56326 Query 61618 GGCATGCATTGTGATTTTGC-TGTTTTG-CTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 || ||||| ||| ||||| || | || ||| || | | | || || Sbjct 56325 GGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCACCTCAAGTCG-----CGCCCAA 56271 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 || || |||| || || | |||||| || || || || ||||| || || Sbjct 56270 GCAAGCAGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGT 56211 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | || ||||||| | |||| ||||||||||| || |||| ||||| |||| Sbjct 56210 CCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGCCAGTACATTG 56151 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 | |||||||||||||||||| | | | | || | || | |||| || | | | Sbjct 56150 AGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTACCA 56091 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 | || ||||| || ||||| | || || |||| |||||||| || || |||||||| | Sbjct 56090 ATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGC 56031 Query 61916 GTGTAGGCGACTATCA 61931 |||| || ||||| || Sbjct 56030 GTGTTGGTGACTACCA 56015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565940722000