Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiocordyceps_20sinensis_20[genbank_20GCA_5F002077885.1_202017-04- 03] 3,687 sequences; 112,137,038 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3225 288 1e-75 seq2829 82.4 1e-13 >seq3225 Length=6454 Score = 288 bits (318), Expect = 1e-75 Identities = 205/229 (90%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||| | Sbjct 1963 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 1906 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| ||| ||| | |||||| Sbjct 1905 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGAAGTTTAACAAGATT 1846 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||||| || | | ||||||||||||||||||| Sbjct 1845 ACCCGGGCCTTCCGGCCAAGG-GAG-GACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 1788 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1787 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1739 >seq2829 Length=71982 Score = 82.4 bits (90), Expect = 1e-13 Identities = 52/56 (93%), Gaps = 4/56 (7%) Strand=Plus/Minus Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT----TATTGCCTCAA 222 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 8329 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAGGTATTGCCTCAA 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751973140205