Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiocordyceps_20sinensis_20[genbank_20GCA_5F002077885.1_202017-04- 03] 3,687 sequences; 112,137,038 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3225 356 4e-96 seq2829 82.4 1e-13 >seq3225 Length=6454 Score = 356 bits (394), Expect = 4e-96 Identities = 234/257 (91%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1820 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1761 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1760 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 1702 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | || || | |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1701 CACTGCCGGAGCAGTACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 1642 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1641 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 1582 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 1581 AGAGCTCTCAATCTGTC 1565 >seq2829 Length=71982 Score = 82.4 bits (90), Expect = 1e-13 Identities = 52/56 (93%), Gaps = 4/56 (7%) Strand=Plus/Minus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT----TATTGCCTCAA 77 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 8329 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAGGTATTGCCTCAA 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796771540047