Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiocordyceps_20sinensis_20[genbank_20GCA_5F002077885.1_202017-04- 03] 3,687 sequences; 112,137,038 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3225 437 2e-120 seq2829 82.4 1e-13 >seq3225 Length=6454 Score = 437 bits (484), Expect = 2e-120 Identities = 284/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | | ||| ||| | |||||||||||||| Sbjct 1656 GAACGAGACCTTAACCTGCTAAATAGCCCGTACTGCTCCGGCAGTGCGCCGGCTTCTTAG 1715 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1716 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1775 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| |||| || || ||||||||| Sbjct 1776 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAG-TCCTC-CCTTGGCCG 1833 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1834 GAAGGCCCGGGTAATCTTGTTAAACTTCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 1893 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| Sbjct 1894 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGACTACGTCCCTG 1953 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 1954 CCCTTTGTA 1962 >seq2829 Length=71982 Score = 82.4 bits (90), Expect = 1e-13 Identities = 52/56 (93%), Gaps = 4/56 (7%) Strand=Plus/Plus Query 109 TTGAGGCAATA----ACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 160 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 8274 TTGAGGCAATACCTAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 8329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947165076736