Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophiocordyceps_20sinensis_20[genbank_20GCA_5F002077885.1_202017-04- 03] 3,687 sequences; 112,137,038 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3225 432 1e-118 seq2072 183 1e-43 seq319 125 2e-26 >seq3225 Length=6454 Score = 432 bits (478), Expect = 1e-118 Identities = 244/247 (99%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5001 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 4942 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4941 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 4882 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4881 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 4822 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4821 TTGAATTACTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCA 4762 Query 537 CTTTCTG 543 ||||||| Sbjct 4761 CTTTCTG 4755 Score = 354 bits (392), Expect = 3e-95 Identities = 254/291 (87%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 5626 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTGGGACACCTGCGTTATG 5567 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 5566 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 5507 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||| |||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 5506 GGCCCGCGGAGGACCTTAAGACCAGAAGTTGGACG--AAAATCCAGCCCCGCTTCATTGA 5449 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||| |||||| | ||||||||||||||| ||||||| ||||||||| || Sbjct 5448 ATAAGTAAAAAGACGATAGGAGTAGTGGTATTTCACCGGCGCCGA---GGCTCCCACCTA 5392 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||| | ||| |||||||| ||| |||||||||||||||||| Sbjct 5391 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAAC 5341 >seq2072 Length=55066 Score = 183 bits (202), Expect = 1e-43 Identities = 137/160 (86%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 169 CCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC 228 |||| |||||| ||| | |||||||||| |||||| | ||||||||||||||| |||| Sbjct 30684 CCAGCCCCGCTTTATTAAATAAGTAAAAAGACGATAGGAGTAGTGGTATTTCACCGGCGC 30625 Query 229 CGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 ||| |||||| || ||||||||||||| | ||| |||||||| ||| ||||||||| Sbjct 30624 CGA---GGCTCCTACCTATTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTC 30568 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328 ||||||||||||||||||||||||||||||||| |||||| Sbjct 30567 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAG 30528 >seq319 Length=99910 Score = 125 bits (138), Expect = 2e-26 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 26 TTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCC 85 |||||| | || |||| ||||||||||||||||||||| |||||| |||||||||||||| Sbjct 81952 TTCTGT-CGCC-TGAGCCCCCCTTAGGACACCTGCGTTGTGGTTTGACAGATGTGCCGCC 81895 Query 86 CCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||| || Sbjct 81894 CCAGCCAAACTCCCCACCTGACAATGTCTTC 81864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635139710176